SCOPe 2.04: Protein: Photosystem II

Lineage for Protein: Photosystem II

Root: SCOPe 2.04
Class i: Low resolution protein structures [58117] (25 folds)
Fold i.5: Photosystems [58155] (1 superfamily)
Superfamily i.5.1: Photosystems [58156] (1 family)
Family i.5.1.1: Photosystems [58157] (5 proteins)
not a true family
Protein Photosystem II [58160] (2 species)
there is a higher resolution structure of Thermosynechococcus elongatus photosystem II (1s5l); however, PDB entry 1S5L designates protein chains by both upper case and lower case letters creating problems with its processing and presentation; there are two copies of the photosystem II complex: one with the upper case chains and the other with lower case chains

Species:

Thermosynechococcus elongatus, bp-1 (formerly Synechococcus elongatus) [TaxId:146786] [58161] (2 PDB entries)
1. Domains for 1fe1:
  1. Domain d1fe1a_: 1fe1 A: [45925]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  2. Domain d1fe1b_: 1fe1 B: [45927]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  3. Domain d1fe1c_: 1fe1 C: [45929]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  4. Domain d1fe1d_: 1fe1 D: [45931]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  5. Domain d1fe1e_: 1fe1 E: [45933]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  6. Domain d1fe1f_: 1fe1 F: [45935]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  7. Domain d1fe1g_: 1fe1 G: [45937]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  8. Domain d1fe1h_: 1fe1 H: [45939]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  9. Domain d1fe1i_: 1fe1 I: [45941]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  10. Domain d1fe1j_: 1fe1 J: [45926]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  11. Domain d1fe1k_: 1fe1 K: [45928]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  12. Domain d1fe1l_: 1fe1 L: [45930]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  13. Domain d1fe1m_: 1fe1 M: [45932]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  14. Domain d1fe1n_: 1fe1 N: [45934]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  15. Domain d1fe1o_: 1fe1 O: [45936]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  16. Domain d1fe1p_: 1fe1 P: [45938]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  17. Domain d1fe1q_: 1fe1 Q: [45940]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
  18. Domain d1fe1r_: 1fe1 R: [45942]
    complexed with cd, cla, fe, hem, mn, pho, pla, tyr
2. Domains for 1ilx:
  1. Domain d1ilxa_: 1ilx A: [62546]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  2. Domain d1ilxb_: 1ilx B: [62547]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  3. Domain d1ilxc_: 1ilx C: [62548]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  4. Domain d1ilxd_: 1ilx D: [62549]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  5. Domain d1ilxe_: 1ilx E: [62550]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  6. Domain d1ilxf_: 1ilx F: [62551]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  7. Domain d1ilxg_: 1ilx G: [62552]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  8. Domain d1ilxh_: 1ilx H: [62553]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  9. Domain d1ilxi_: 1ilx I: [62554]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  10. Domain d1ilxj_: 1ilx J: [62555]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  11. Domain d1ilxk_: 1ilx K: [62556]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  12. Domain d1ilxl_: 1ilx L: [62557]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  13. Domain d1ilxm_: 1ilx M: [62558]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  14. Domain d1ilxn_: 1ilx N: [62559]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  15. Domain d1ilxo_: 1ilx O: [62560]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  16. Domain d1ilxp_: 1ilx P: [62561]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  17. Domain d1ilxq_: 1ilx Q: [62562]
    complexed with cd, cla, fe, hem, mn, pho, pl9
  18. Domain d1ilxr_: 1ilx R: [62563]
    complexed with cd, cla, fe, hem, mn, pho, pl9
Thermosynechococcus vulcanus [TaxId:32053] [82945] (2 PDB entries)
1. Domains for 1izl:
  1. Domain d1izl0_: 1izl 0: [76992]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  2. Domain d1izl1_: 1izl 1: [76993]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  3. Domain d1izla_: 1izl A: [76994]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  4. Domain d1izlb_: 1izl B: [76995]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  5. Domain d1izlc_: 1izl C: [76996]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  6. Domain d1izld_: 1izl D: [76997]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  7. Domain d1izle_: 1izl E: [76998]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  8. Domain d1izlf_: 1izl F: [76999]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  9. Domain d1izlg_: 1izl G: [77000]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  10. Domain d1izlh_: 1izl H: [77001]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  11. Domain d1izli_: 1izl I: [77002]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  12. Domain d1izlj_: 1izl J: [77003]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  13. Domain d1izlk_: 1izl K: [77004]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  14. Domain d1izll_: 1izl L: [77005]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  15. Domain d1izlm_: 1izl M: [77006]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  16. Domain d1izln_: 1izl N: [77007]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  17. Domain d1izlo_: 1izl O: [77008]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  18. Domain d1izlp_: 1izl P: [77009]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  19. Domain d1izlq_: 1izl Q: [77010]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  20. Domain d1izlr_: 1izl R: [77011]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  21. Domain d1izls_: 1izl S: [77012]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  22. Domain d1izlt_: 1izl T: [77013]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  23. Domain d1izlu_: 1izl U: [77014]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  24. Domain d1izlv_: 1izl V: [77015]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  25. Domain d1izlw_: 1izl W: [77016]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  26. Domain d1izlx_: 1izl X: [77017]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  27. Domain d1izly_: 1izl Y: [77018]
    complexed with bcr, cla, fe, hem, mn, pho, pla
  28. Domain d1izlz_: 1izl Z: [77019]
    complexed with bcr, cla, fe, hem, mn, pho, pla
2. Domains for 1w5c:
  1. Domain d1w5ca_: 1w5c A: [114215]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  2. Domain d1w5cb_: 1w5c B: [114216]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  3. Domain d1w5cc_: 1w5c C: [114217]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  4. Domain d1w5cd_: 1w5c D: [114218]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  5. Domain d1w5ce_: 1w5c E: [114219]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  6. Domain d1w5cf_: 1w5c F: [114220]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  7. Domain d1w5cg_: 1w5c G: [114221]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  8. Domain d1w5ch_: 1w5c H: [114222]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  9. Domain d1w5ci_: 1w5c I: [114223]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  10. Domain d1w5cj_: 1w5c J: [114224]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  11. Domain d1w5ck_: 1w5c K: [114225]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  12. Domain d1w5cl_: 1w5c L: [114226]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  13. Domain d1w5ct_: 1w5c T: [114227]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9
  14. Domain d1w5cv_: 1w5c V: [114228]
    complexed with bcr, cla, fe2, hec, hem, mn, pho, pl9

More info for Protein Photosystem II from i.5.1.1: Photosystems

Timeline for Protein Photosystem II from i.5.1.1: Photosystems:

Protein Photosystem II from i.5.1.1: Photosystems first appeared (with stable ids) in SCOP 1.55
Protein Photosystem II from i.5.1.1: Photosystems appears in SCOPe 2.03
Protein Photosystem II from i.5.1.1: Photosystems appears in SCOPe 2.05
Protein Photosystem II from i.5.1.1: Photosystems appears in the current release, SCOPe 2.08