Lineage for Species: Escherichia coli

  1. Root: SCOP 1.69
  2. 526321Class i: Low resolution protein structures [58117] (24 folds)
  3. 526322Fold i.1: Ribosome and ribosomal fragments [58118] (1 superfamily)
  4. 526323Superfamily i.1.1: Ribosome and ribosomal fragments [58119] (3 families) (S)
  5. 526324Family i.1.1.1: Ribosome complexes [58120] (1 protein)
  6. 526325Protein 70S ribosome functional complex [58121] (3 species)
  7. 526374Species Escherichia coli [TaxId:562] [58123] (29 PDB entries)

PDB entries in Species: Escherichia coli:

  1. Domain(s) for 1eg0:
    1. 526493Domain d1eg0a_: 1eg0 A: [45807]
    2. 526494Domain d1eg0b_: 1eg0 B: [45808]
    3. 526495Domain d1eg0c_: 1eg0 C: [45809]
    4. 526496Domain d1eg0d_: 1eg0 D: [45810]
    5. 526497Domain d1eg0e_: 1eg0 E: [45811]
    6. 526498Domain d1eg0f_: 1eg0 F: [45812]
    7. 526499Domain d1eg0g_: 1eg0 G: [45813]
    8. Domain d1eg0h_: 1eg0 H: [45814]
    9. Domain d1eg0i_: 1eg0 I: [45815]
    10. 526502Domain d1eg0j_: 1eg0 J: [45816]
    11. 526503Domain d1eg0k_: 1eg0 K: [45817]
    12. Domain d1eg0l_: 1eg0 L: [45818]
    13. Domain d1eg0m_: 1eg0 M: [45819]
    14. 526506Domain d1eg0n_: 1eg0 N: [45820]
    15. Domain d1eg0o_: 1eg0 O: [45821]
  2. Domain(s) for 1fcw:
    1. Domain d1fcwa_: 1fcw A: [45822]
    2. Domain d1fcwb_: 1fcw B: [45823]
    3. Domain d1fcwc_: 1fcw C: [45824]
    4. Domain d1fcwd_: 1fcw D: [45825]
    5. Domain d1fcwe_: 1fcw E: [45826]
      tRNA positions during the elongation cycle
  3. Domain(s) for 1jqm:
    1. 526513Domain d1jqma_: 1jqm A: [63235]
    2. 526514Domain d1jqmb_: 1jqm B: [63236]
      Fitting of L11 protein and elongation factor G (EF-G) in the cryo-EM map
  4. Domain(s) for 1jqs:
    1. 526515Domain d1jqsa_: 1jqs A: [63237]
    2. 526516Domain d1jqsb_: 1jqs B: [63238]
    3. 526517Domain d1jqsc_: 1jqs C: [63239]
      Fitting of L11 and EF-G domains G' and V in the cryo-EM map
  5. Domain(s) for 1jqt:
  6. Domain(s) for 1ls2:
    1. 526519Domain d1ls2a_: 1ls2 A: [74238]
    2. Domain d1ls2b_: 1ls2 B: [74239]
      Fitting of EF-TU and tRNA in the cryo-EM map
  7. Domain(s) for 1lu3:
    • Domain d1lu3a_: 1lu3 A: [74257]
      Fitting of the anticodon loop of tRNA (nucleotide 26-42) in the cryo-EM map
  8. Domain(s) for 1mi6:
  9. Domain(s) for 1mj1:
    1. 526523Domain d1mj1a_: 1mj1 A: [79175]
    2. Domain d1mj1c_: 1mj1 C: [79176]
    3. Domain d1mj1d_: 1mj1 D: [79177]
    4. 526526Domain d1mj1l_: 1mj1 L: [79178]
      Fitting the ternary complex of EF-TU/tRNA/GTP in the cryo-EM map
    5. 526527Domain d1mj1o_: 1mj1 O: [79179]
    6. 526528Domain d1mj1p_: 1mj1 P: [79180]
    7. Domain d1mj1q_: 1mj1 Q: [79181]
    8. Domain d1mj1r_: 1mj1 R: [79182]
  10. Domain(s) for 1ml5:
    1. Domain d1ml5a_: 1ml5 A: [79257]
    2. Domain d1ml5b_: 1ml5 B: [79258]
    3. Domain d1ml5c_: 1ml5 C: [79259]
    4. 526534Domain d1ml5e_: 1ml5 E: [79260]
    5. 526535Domain d1ml5f_: 1ml5 F: [79261]
    6. 526536Domain d1ml5g_: 1ml5 G: [79262]
    7. 526537Domain d1ml5h_: 1ml5 H: [79263]
    8. 526538Domain d1ml5i_: 1ml5 I: [79264]
    9. 526539Domain d1ml5j_: 1ml5 J: [79265]
    10. 526540Domain d1ml5k_: 1ml5 K: [79266]
    11. 526541Domain d1ml5l_: 1ml5 L: [79267]
    12. 526542Domain d1ml5m_: 1ml5 M: [79268]
    13. 526543Domain d1ml5n_: 1ml5 N: [79269]
    14. 526544Domain d1ml5o_: 1ml5 O: [79270]
    15. 526545Domain d1ml5p_: 1ml5 P: [79271]
    16. 526546Domain d1ml5q_: 1ml5 Q: [79272]
    17. 526547Domain d1ml5r_: 1ml5 R: [79273]
    18. 526548Domain d1ml5s_: 1ml5 S: [79274]
    19. 526549Domain d1ml5t_: 1ml5 T: [79275]
    20. 526550Domain d1ml5u_: 1ml5 U: [79276]
    21. 526551Domain d1ml5v_: 1ml5 V: [79277]
    22. 526552Domain d1ml5w_: 1ml5 W: [79278]
    23. 526553Domain d1ml5x_: 1ml5 X: [79279]
      also include low case chains a;b;c;d;e;f;g;h;l;m;n;o;p;q;r;s;t;u;v;w;x
      termination complex with release factor 2
    24. 526554Domain d1ml5z_: 1ml5 Z: [79280]
  11. Domain(s) for 1p6g:
    1. Domain d1p6ga_: 1p6g A: [87820]
    2. 526556Domain d1p6gc_: 1p6g C: [87821]
    3. 526557Domain d1p6gd_: 1p6g D: [87822]
    4. 526558Domain d1p6ge_: 1p6g E: [87823]
    5. 526559Domain d1p6gf_: 1p6g F: [87824]
    6. 526560Domain d1p6gg_: 1p6g G: [87825]
    7. 526561Domain d1p6gh_: 1p6g H: [87826]
    8. 526562Domain d1p6gi_: 1p6g I: [87827]
    9. 526563Domain d1p6gj_: 1p6g J: [87828]
    10. 526564Domain d1p6gk_: 1p6g K: [87829]
    11. 526565Domain d1p6gl_: 1p6g L: [87830]
    12. 526566Domain d1p6gm_: 1p6g M: [87831]
    13. 526567Domain d1p6gn_: 1p6g N: [87832]
    14. 526568Domain d1p6go_: 1p6g O: [87833]
    15. 526569Domain d1p6gp_: 1p6g P: [87834]
    16. 526570Domain d1p6gq_: 1p6g Q: [87835]
    17. 526571Domain d1p6gr_: 1p6g R: [87836]
    18. 526572Domain d1p6gs_: 1p6g S: [87837]
    19. 526573Domain d1p6gt_: 1p6g T: [87838]
      30S subunit fit in the cryo-EM map of 70S ribosome
  12. Domain(s) for 1p85:
    1. Domain d1p850_: 1p85 0: [87866]
    2. 526575Domain d1p851_: 1p85 1: [87867]
    3. 526576Domain d1p854_: 1p85 4: [87868]
      50S subunit fit in the cryo-EM map of 70S ribosome
    4. Domain d1p859_: 1p85 9: [87869]
    5. 526578Domain d1p85a_: 1p85 A: [87870]
    6. 526579Domain d1p85b_: 1p85 B: [87871]
    7. 526580Domain d1p85c_: 1p85 C: [87872]
    8. 526581Domain d1p85d_: 1p85 D: [87873]
    9. 526582Domain d1p85e_: 1p85 E: [87874]
    10. 526583Domain d1p85f_: 1p85 F: [87875]
    11. 526584Domain d1p85g_: 1p85 G: [87876]
    12. 526585Domain d1p85h_: 1p85 H: [87877]
    13. 526586Domain d1p85i_: 1p85 I: [87878]
    14. 526587Domain d1p85j_: 1p85 J: [87879]
    15. 526588Domain d1p85k_: 1p85 K: [87880]
    16. 526589Domain d1p85l_: 1p85 L: [87881]
    17. 526590Domain d1p85m_: 1p85 M: [87882]
    18. 526591Domain d1p85n_: 1p85 N: [87883]
    19. 526592Domain d1p85o_: 1p85 O: [87884]
    20. 526593Domain d1p85q_: 1p85 Q: [87885]
    21. 526594Domain d1p85r_: 1p85 R: [87886]
    22. 526595Domain d1p85s_: 1p85 S: [87887]
    23. 526596Domain d1p85t_: 1p85 T: [87888]
    24. 526597Domain d1p85u_: 1p85 U: [87889]
    25. 526598Domain d1p85w_: 1p85 W: [87890]
    26. 526599Domain d1p85x_: 1p85 X: [87891]
    27. 526600Domain d1p85z_: 1p85 Z: [87892]
  13. Domain(s) for 1p86:
    1. Domain d1p860_: 1p86 0: [87893]
    2. 526602Domain d1p861_: 1p86 1: [87894]
    3. 526603Domain d1p864_: 1p86 4: [87895]
      50S subunit fit in the cryo-EM map of 70S ribosome
    4. Domain d1p866_: 1p86 6: [87896]
    5. Domain d1p869_: 1p86 9: [87897]
    6. 526606Domain d1p86a_: 1p86 A: [87898]
    7. 526607Domain d1p86b_: 1p86 B: [87899]
    8. 526608Domain d1p86c_: 1p86 C: [87900]
    9. 526609Domain d1p86d_: 1p86 D: [87901]
    10. 526610Domain d1p86e_: 1p86 E: [87902]
    11. 526611Domain d1p86f_: 1p86 F: [87903]
    12. 526612Domain d1p86g_: 1p86 G: [87904]
    13. 526613Domain d1p86h_: 1p86 H: [87905]
    14. 526614Domain d1p86i_: 1p86 I: [87906]
    15. 526615Domain d1p86j_: 1p86 J: [87907]
    16. 526616Domain d1p86k_: 1p86 K: [87908]
    17. 526617Domain d1p86l_: 1p86 L: [87909]
    18. 526618Domain d1p86m_: 1p86 M: [87910]
    19. 526619Domain d1p86n_: 1p86 N: [87911]
    20. 526620Domain d1p86o_: 1p86 O: [87912]
    21. 526621Domain d1p86q_: 1p86 Q: [87913]
    22. 526622Domain d1p86r_: 1p86 R: [87914]
    23. 526623Domain d1p86s_: 1p86 S: [87915]
    24. 526624Domain d1p86t_: 1p86 T: [87916]
    25. 526625Domain d1p86u_: 1p86 U: [87917]
    26. 526626Domain d1p86w_: 1p86 W: [87918]
    27. 526627Domain d1p86x_: 1p86 X: [87919]
    28. 526628Domain d1p86z_: 1p86 Z: [87920]
  14. Domain(s) for 1p87:
    1. Domain d1p87a_: 1p87 A: [87921]
    2. 526630Domain d1p87b_: 1p87 B: [87922]
    3. 526631Domain d1p87c_: 1p87 C: [87923]
    4. 526632Domain d1p87d_: 1p87 D: [87924]
    5. 526633Domain d1p87e_: 1p87 E: [87925]
    6. 526634Domain d1p87f_: 1p87 F: [87926]
    7. 526635Domain d1p87g_: 1p87 G: [87927]
    8. 526636Domain d1p87h_: 1p87 H: [87928]
    9. 526637Domain d1p87i_: 1p87 I: [87929]
    10. 526638Domain d1p87j_: 1p87 J: [87930]
    11. 526639Domain d1p87k_: 1p87 K: [87931]
    12. 526640Domain d1p87l_: 1p87 L: [87932]
    13. 526641Domain d1p87m_: 1p87 M: [87933]
    14. 526642Domain d1p87n_: 1p87 N: [87934]
    15. 526643Domain d1p87o_: 1p87 O: [87935]
    16. 526644Domain d1p87p_: 1p87 P: [87936]
    17. 526645Domain d1p87q_: 1p87 Q: [87937]
    18. 526646Domain d1p87r_: 1p87 R: [87938]
    19. 526647Domain d1p87s_: 1p87 S: [87939]
    20. 526648Domain d1p87t_: 1p87 T: [87940]
      30S subunit fit in the cryo-EM map of 70S ribosome
  15. Domain(s) for 1pn6:
    • 526649Domain d1pn6a_: 1pn6 A: [88161]
      domain-wise fitting of the crystal structure of T. thermophilus EF-G in the cryo-EM map of 70S ribosome
  16. Domain(s) for 1pn7:
    1. Domain d1pn7c_: 1pn7 C: [88162]
      S12, L11 proteins and p-tRNA aligned to the cryo-EM map
    2. 526651Domain d1pn7l_: 1pn7 L: [88163]
    3. 526652Domain d1pn7o_: 1pn7 O: [88164]
  17. Domain(s) for 1pn8:
    1. Domain d1pn8d_: 1pn8 D: [88165]
      S12, L11 proteins and E-site tRNA aligned to the cryo-EM map
    2. 526654Domain d1pn8l_: 1pn8 L: [88166]
    3. 526655Domain d1pn8o_: 1pn8 O: [88167]
  18. Domain(s) for 1pns:
    1. Domain d1pnsa_: 1pns A: [88168]
    2. 526385Domain d1pnsb_: 1pns B: [88169]
    3. 526386Domain d1pnsc_: 1pns C: [88170]
    4. 526387Domain d1pnsd_: 1pns D: [88171]
    5. 526388Domain d1pnse_: 1pns E: [88172]
    6. 526389Domain d1pnsf_: 1pns F: [88173]
    7. 526390Domain d1pnsg_: 1pns G: [88174]
    8. 526391Domain d1pnsh_: 1pns H: [88175]
    9. 526392Domain d1pnsi_: 1pns I: [88176]
    10. 526393Domain d1pnsj_: 1pns J: [88177]
    11. 526394Domain d1pnsk_: 1pns K: [88178]
    12. 526395Domain d1pnsl_: 1pns L: [88179]
    13. 526396Domain d1pnsm_: 1pns M: [88180]
    14. 526397Domain d1pnsn_: 1pns N: [88181]
    15. 526398Domain d1pnso_: 1pns O: [88182]
    16. 526399Domain d1pnsp_: 1pns P: [88183]
    17. 526400Domain d1pnsq_: 1pns Q: [88184]
    18. 526401Domain d1pnsr_: 1pns R: [88185]
    19. 526402Domain d1pnss_: 1pns S: [88186]
    20. 526403Domain d1pnst_: 1pns T: [88187]
    21. Domain d1pnsu_: 1pns U: [88188]
    22. Domain d1pnsv_: 1pns V: [88189]
    23. Domain d1pnsw_: 1pns W: [88190]
      30S subunit; the coordinates of 50S subunit in 1pnu
  19. Domain(s) for 1pnu:
    1. Domain d1pnu0_: 1pnu 0: [88191]
    2. 526428Domain d1pnu1_: 1pnu 1: [88192]
    3. 526429Domain d1pnu2_: 1pnu 2: [88193]
    4. 526430Domain d1pnu3_: 1pnu 3: [88194]
    5. 526431Domain d1pnu4_: 1pnu 4: [88195]
    6. 526432Domain d1pnu5_: 1pnu 5: [88196]
    7. Domain d1pnu9_: 1pnu 9: [88197]
    8. 526434Domain d1pnua_: 1pnu A: [88198]
    9. 526435Domain d1pnub_: 1pnu B: [88199]
    10. 526436Domain d1pnuc_: 1pnu C: [88200]
    11. 526437Domain d1pnud_: 1pnu D: [88201]
    12. 526438Domain d1pnue_: 1pnu E: [88202]
    13. 526439Domain d1pnuf_: 1pnu F: [88203]
    14. 526440Domain d1pnug_: 1pnu G: [88204]
    15. 526441Domain d1pnuh_: 1pnu H: [88205]
    16. 526442Domain d1pnui_: 1pnu I: [88206]
    17. 526443Domain d1pnuj_: 1pnu J: [88207]
    18. 526444Domain d1pnuk_: 1pnu K: [88208]
    19. 526445Domain d1pnul_: 1pnu L: [88209]
    20. 526446Domain d1pnum_: 1pnu M: [88210]
    21. 526447Domain d1pnun_: 1pnu N: [88211]
    22. 526448Domain d1pnuo_: 1pnu O: [88212]
    23. 526449Domain d1pnup_: 1pnu P: [88213]
    24. 526450Domain d1pnuq_: 1pnu Q: [88214]
    25. 526451Domain d1pnur_: 1pnu R: [88215]
    26. 526452Domain d1pnus_: 1pnu S: [88216]
    27. 526453Domain d1pnut_: 1pnu T: [88217]
    28. 526454Domain d1pnuu_: 1pnu U: [88218]
    29. Domain d1pnuv_: 1pnu V: [88219]
    30. 526456Domain d1pnuw_: 1pnu W: [88220]
    31. 526457Domain d1pnux_: 1pnu X: [88221]
    32. 526458Domain d1pnuy_: 1pnu Y: [88222]
    33. 526459Domain d1pnuz_: 1pnu Z: [88223]
      50S subunit; the coordinates of 30S subunit in 1pns
  20. Domain(s) for 1pnx:
    1. Domain d1pnxa_: 1pnx A: [88224]
    2. 526408Domain d1pnxb_: 1pnx B: [88225]
    3. 526409Domain d1pnxc_: 1pnx C: [88226]
    4. 526410Domain d1pnxd_: 1pnx D: [88227]
    5. 526411Domain d1pnxe_: 1pnx E: [88228]
    6. 526412Domain d1pnxf_: 1pnx F: [88229]
    7. 526413Domain d1pnxg_: 1pnx G: [88230]
    8. 526414Domain d1pnxh_: 1pnx H: [88231]
    9. 526415Domain d1pnxi_: 1pnx I: [88232]
    10. 526416Domain d1pnxj_: 1pnx J: [88233]
    11. 526417Domain d1pnxk_: 1pnx K: [88234]
    12. 526418Domain d1pnxl_: 1pnx L: [88235]
    13. 526419Domain d1pnxm_: 1pnx M: [88236]
    14. 526420Domain d1pnxn_: 1pnx N: [88237]
    15. 526421Domain d1pnxo_: 1pnx O: [88238]
    16. 526422Domain d1pnxp_: 1pnx P: [88239]
    17. 526423Domain d1pnxq_: 1pnx Q: [88240]
    18. 526424Domain d1pnxr_: 1pnx R: [88241]
    19. 526425Domain d1pnxs_: 1pnx S: [88242]
    20. 526426Domain d1pnxt_: 1pnx T: [88243]
      30S subunit; the coordinates of 50S subunit in 1pny
  21. Domain(s) for 1pny:
    1. Domain d1pny0_: 1pny 0: [88244]
    2. 526461Domain d1pny1_: 1pny 1: [88245]
    3. 526462Domain d1pny2_: 1pny 2: [88246]
    4. 526463Domain d1pny3_: 1pny 3: [88247]
    5. 526464Domain d1pny4_: 1pny 4: [88248]
    6. 526465Domain d1pny5_: 1pny 5: [88249]
    7. Domain d1pny9_: 1pny 9: [88250]
    8. 526467Domain d1pnya_: 1pny A: [88251]
    9. 526468Domain d1pnyb_: 1pny B: [88252]
    10. 526469Domain d1pnyc_: 1pny C: [88253]
    11. 526470Domain d1pnyd_: 1pny D: [88254]
    12. 526471Domain d1pnye_: 1pny E: [88255]
    13. 526472Domain d1pnyf_: 1pny F: [88256]
    14. 526473Domain d1pnyg_: 1pny G: [88257]
    15. 526474Domain d1pnyh_: 1pny H: [88258]
    16. 526475Domain d1pnyi_: 1pny I: [88259]
    17. 526476Domain d1pnyj_: 1pny J: [88260]
    18. 526477Domain d1pnyk_: 1pny K: [88261]
    19. 526478Domain d1pnyl_: 1pny L: [88262]
    20. 526479Domain d1pnym_: 1pny M: [88263]
    21. 526480Domain d1pnyn_: 1pny N: [88264]
    22. 526481Domain d1pnyo_: 1pny O: [88265]
    23. 526482Domain d1pnyp_: 1pny P: [88266]
    24. 526483Domain d1pnyq_: 1pny Q: [88267]
    25. 526484Domain d1pnyr_: 1pny R: [88268]
    26. 526485Domain d1pnys_: 1pny S: [88269]
    27. 526486Domain d1pnyt_: 1pny T: [88270]
    28. 526487Domain d1pnyu_: 1pny U: [88271]
    29. Domain d1pnyv_: 1pny V: [88272]
    30. 526489Domain d1pnyw_: 1pny W: [88273]
    31. 526490Domain d1pnyx_: 1pny X: [88274]
    32. 526491Domain d1pnyy_: 1pny Y: [88275]
    33. 526492Domain d1pnyz_: 1pny Z: [88276]
      50S subunit; the coordinates of 30S subunit in 1pnx
  22. Domain(s) for 1qza:
    • Domain d1qzab_: 1qza B: [96622]
      tRNA model fitted into the cryo-EM map of EF-Tu ternary complex
  23. Domain(s) for 1qzb:
    • Domain d1qzbb_: 1qzb B: [96623]
      tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational state
  24. Domain(s) for 1qzc:
    1. Domain d1qzca_: 1qzc A: [96624]
    2. Domain d1qzcb_: 1qzc B: [96625]
    3. Domain d1qzcc_: 1qzc C: [96626]
    4. 526379Domain d1qzcl_: 1qzc L: [96627]
      S12, sh44, lh69 and srl separately fitted into the cryo-EM map of EF-Tu ternary complex
  25. Domain(s) for 1qzd:
    • 526657Domain d1qzda_: 1qzd A: [96628]
      EF-Tu/kirromycin model fitted into the cryo-EM map of EF-Tu ternary complex
  26. Domain(s) for 1r2w:
    1. 526380Domain d1r2wa_: 1r2w A: [96885]
    2. Domain d1r2wc_: 1r2w C: [96886]
      L11 with 58nts of 23s rRNA fitted into the cryo-em map of the 70S ribosome
  27. Domain(s) for 1r2x:
    1. 526382Domain d1r2xa_: 1r2x A: [96887]
    2. Domain d1r2xc_: 1r2x C: [96888]
      L11 with 58nts of 23s rRNA fitted into the cryo-em map of EF-Tu ternary complex
  28. Domain(s) for 1t1m:
    1. Domain d1t1ma_: 1t1m A: [106254]
    2. Domain d1t1mb_: 1t1m B: [106255]
    3. 526660Domain d1t1mc_: 1t1m C: [106256]
  29. Domain(s) for 1t1o:
    1. Domain d1t1oa_: 1t1o A: [106257]
    2. Domain d1t1ob_: 1t1o B: [106258]
    3. Domain d1t1oc_: 1t1o C: [106259]

More info for Species Escherichia coli [TaxId:562] from i.1.1.1 70S ribosome functional complex

Timeline for Species Escherichia coli [TaxId:562] from i.1.1.1 70S ribosome functional complex: