Lineage for Species: Human immunodeficiency virus type 1 [TaxId: 11676]

  1. Root: SCOPe 2.08
  2. 3039230Class h: Coiled coil proteins [57942] (7 folds)
  3. 3040824Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 3042053Superfamily h.3.2: Virus ectodomain [58069] (2 families) (S)
  5. 3042054Family h.3.2.1: Virus ectodomain [58070] (9 proteins)
  6. 3042100Protein Retrovius gp41 protease-resistant core [58071] (4 species)
    coiled coil; biological unit: trimer
  7. 3042101Species Human immunodeficiency virus type 1 [TaxId:11676] [58072] (26 PDB entries)

PDB entries in Species: Human immunodeficiency virus type 1 [TaxId: 11676]:

  1. Domain(s) for 1aik:
  2. Domain(s) for 1czq:
    • 3042102Domain d1czqa_: 1czq A: [45720]
      fusion protein between gp41 and GCN4 fragments; complex with a d-peptide inhibitor of HIV-1 entry
      complexed with cl
  3. Domain(s) for 1df4:
  4. Domain(s) for 1df5:
  5. Domain(s) for 1dlb:
  6. Domain(s) for 1env:
  7. Domain(s) for 1f23:
    1. 3042139Domain d1f23a_: 1f23 A: [59602]
    2. 3042140Domain d1f23b_: 1f23 B: [59603]
    3. 3042141Domain d1f23c_: 1f23 C: [59604]
    4. 3042142Domain d1f23d_: 1f23 D: [59605]
    5. 3042143Domain d1f23e_: 1f23 E: [59606]
    6. 3042144Domain d1f23f_: 1f23 F: [59607]
  8. Domain(s) for 1fav:
    • 3042147Domain d1fav.1: 1fav A:,C: [45728]
      fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
  9. Domain(s) for 1gzl:
    1. 3042115Domain d1gzl.1: 1gzl A:,C: [76422]
      fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
      complexed with cl, n2p
    2. 3042116Domain d1gzl.2: 1gzl B:,D: [76423]
      fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
      complexed with cl, n2p
  10. Domain(s) for 1i5x:
  11. Domain(s) for 1i5y:
  12. Domain(s) for 1k33:
  13. Domain(s) for 1k34:
  14. Domain(s) for 1qr8:
  15. Domain(s) for 1qr9:
  16. Domain(s) for 1szt:
  17. Domain(s) for 2ot5:
  18. Domain(s) for 2q3i:
  19. Domain(s) for 2q5u:
    1. 3042104Domain d2q5ua1: 2q5u A:1-45 [139884]
      complexed with cl
    2. 3042105Domain d2q5ub1: 2q5u B:1-45 [139885]
      complexed with cl
    3. 3042106Domain d2q5uc1: 2q5u C:1-45 [139886]
      complexed with cl
  20. Domain(s) for 2q7c:
    1. 3042120Domain d2q7ca1: 2q7c A:1-45 [139887]
      complexed with cl
    2. 3042121Domain d2q7cb1: 2q7c B:1-45 [139888]
      complexed with cl
    3. 3042122Domain d2q7cc1: 2q7c C:1-45 [139889]
      complexed with cl
  21. Domain(s) for 3cp1:
  22. Domain(s) for 3cyo:
  23. Domain(s) for 3k9a:
  24. Domain(s) for 3wfv:
  25. Domain(s) for 5hfl:
    1. 3042127Domain d5hfla1: 5hfl A:546-656 [327953]
      Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
      automated match to d1f23b_
    2. 3042128Domain d5hflb1: 5hfl B:546-656 [328068]
      Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
      automated match to d1f23b_
    3. 3042129Domain d5hflc1: 5hfl C:546-656 [328066]
      Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
      automated match to d1f23b_
    4. 3042130Domain d5hfld1: 5hfl D:546-656 [327941]
      Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
      automated match to d1f23b_
    5. 3042131Domain d5hfle1: 5hfl E:546-653 [327913]
      Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
      automated match to d1f23b_
    6. 3042132Domain d5hflf1: 5hfl F:546-656 [328086]
      Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
      automated match to d1f23b_
  26. Domain(s) for 5hfm:
    1. 3042133Domain d5hfma1: 5hfm A:539-656 [328131]
      Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
      automated match to d3cyoa_
      complexed with tam
    2. 3042134Domain d5hfmb1: 5hfm B:539-656 [328074]
      Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
      automated match to d3cyoa_
      complexed with tam
    3. 3042135Domain d5hfmc1: 5hfm C:539-656 [327963]
      Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
      automated match to d3cyoa_
      complexed with tam
    4. 3042136Domain d5hfmd1: 5hfm D:539-656 [328030]
      Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
      automated match to d3cyoa_
      complexed with tam
    5. 3042137Domain d5hfme1: 5hfm E:539-656 [327918]
      Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
      automated match to d3cyoa_
      complexed with tam
    6. 3042138Domain d5hfmf1: 5hfm F:539-656 [328047]
      Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
      automated match to d3cyoa_
      complexed with tam

More info for Species Human immunodeficiency virus type 1 [TaxId:11676] from h.3.2.1 Retrovius gp41 protease-resistant core

Timeline for Species Human immunodeficiency virus type 1 [TaxId:11676] from h.3.2.1 Retrovius gp41 protease-resistant core: