SCOPe 2.08: Protein: Retrovius gp41 protease-resistant core

Lineage for Protein: Retrovius gp41 protease-resistant core

Root: SCOPe 2.08
Class h: Coiled coil proteins [57942] (7 folds)
Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
core: trimeric coiled coil
Superfamily h.3.2: Virus ectodomain [58069] (2 families)
Family h.3.2.1: Virus ectodomain [58070] (9 proteins)
Protein Retrovius gp41 protease-resistant core [58071] (4 species)
coiled coil; biological unit: trimer

Species:

Human immunodeficiency virus type 1 [TaxId:11676] [58072] (26 PDB entries)
1. Domain for 1aik:
  - Domain d1aik.1: 1aik N:,C: [45723]
2. Domain for 1czq:
  - Domain d1czqa_: 1czq A: [45720]
    fusion protein between gp41 and GCN4 fragments; complex with a d-peptide inhibitor of HIV-1 entry
    complexed with cl
3. Domain for 1df4:
  - Domain d1df4a_: 1df4 A: [45719]
4. Domain for 1df5:
  - Domain d1df5a_: 1df5 A: [45727]
5. Domain for 1dlb:
  - Domain d1dlba_: 1dlb A: [45722]
6. Domain for 1env:
  - Domain d1enva_: 1env A: [45726]
7. Domains for 1f23:
  1. Domain d1f23a_: 1f23 A: [59602]
  2. Domain d1f23b_: 1f23 B: [59603]
  3. Domain d1f23c_: 1f23 C: [59604]
  4. Domain d1f23d_: 1f23 D: [59605]
  5. Domain d1f23e_: 1f23 E: [59606]
  6. Domain d1f23f_: 1f23 F: [59607]
8. Domain for 1fav:
  - Domain d1fav.1: 1fav A:,C: [45728]
    fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
9. Domains for 1gzl:
  1. Domain d1gzl.1: 1gzl A:,C: [76422]
    fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
    complexed with cl, n2p
  2. Domain d1gzl.2: 1gzl B:,D: [76423]
    fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
    complexed with cl, n2p
10. Domain for 1i5x:
  - Domain d1i5xa_: 1i5x A: [76736]
    complexed with so4
11. Domain for 1i5y:
  - Domain d1i5ya_: 1i5y A: [76737]
    complexed with so4
12. Domain for 1k33:
  - Domain d1k33a_: 1k33 A: [68092]
    mutant
13. Domain for 1k34:
  - Domain d1k34a_: 1k34 A: [68093]
    mutant
14. Domain for 1qr8:
  - Domain d1qr8a_: 1qr8 A: [45724]
15. Domain for 1qr9:
  - Domain d1qr9a_: 1qr9 A: [45721]
16. Domain for 1szt:
  - Domain d1szta_: 1szt A: [45725]
17. Domain for 2ot5:
  - Domain d2ot5a_: 2ot5 A: [149008]
    automated match to d3cp1a1
    mutant
18. Domain for 2q3i:
  - Domain d2q3ia1: 2q3i A:1-45 [139794]
    automatically matched to d1czqa_
    complexed with cl
19. Domains for 2q5u:
  1. Domain d2q5ua1: 2q5u A:1-45 [139884]
    complexed with cl
  2. Domain d2q5ub1: 2q5u B:1-45 [139885]
    complexed with cl
  3. Domain d2q5uc1: 2q5u C:1-45 [139886]
    complexed with cl
20. Domains for 2q7c:
  1. Domain d2q7ca1: 2q7c A:1-45 [139887]
    complexed with cl
  2. Domain d2q7cb1: 2q7c B:1-45 [139888]
    complexed with cl
  3. Domain d2q7cc1: 2q7c C:1-45 [139889]
    complexed with cl
21. Domain for 3cp1:
  - Domain d3cp1a_: 3cp1 A: [156885]
    automated match to d3cyoa1
    mutant
22. Domain for 3cyo:
  - Domain d3cyoa_: 3cyo A: [157147]
    automated match to d3cyoa1
    mutant
23. Domain for 3k9a:
  - Domain d3k9aa1: 3k9a A:15-94 [264966]
    Other proteins in same PDB: d3k9aa2
    automated match to d3wfva_
24. Domain for 3wfv:
  - Domain d3wfva1: 3wfv A:546-623 [250746]
    Other proteins in same PDB: d3wfva2
    automated match to d1f23b_
25. Domains for 5hfl:
  1. Domain d5hfla1: 5hfl A:546-656 [327953]
    Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
    automated match to d1f23b_
  2. Domain d5hflb1: 5hfl B:546-656 [328068]
    Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
    automated match to d1f23b_
  3. Domain d5hflc1: 5hfl C:546-656 [328066]
    Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
    automated match to d1f23b_
  4. Domain d5hfld1: 5hfl D:546-656 [327941]
    Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
    automated match to d1f23b_
  5. Domain d5hfle1: 5hfl E:546-653 [327913]
    Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
    automated match to d1f23b_
  6. Domain d5hflf1: 5hfl F:546-656 [328086]
    Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
    automated match to d1f23b_
26. Domains for 5hfm:
  1. Domain d5hfma1: 5hfm A:539-656 [328131]
    Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
    automated match to d3cyoa_
    complexed with tam
  2. Domain d5hfmb1: 5hfm B:539-656 [328074]
    Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
    automated match to d3cyoa_
    complexed with tam
  3. Domain d5hfmc1: 5hfm C:539-656 [327963]
    Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
    automated match to d3cyoa_
    complexed with tam
  4. Domain d5hfmd1: 5hfm D:539-656 [328030]
    Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
    automated match to d3cyoa_
    complexed with tam
  5. Domain d5hfme1: 5hfm E:539-656 [327918]
    Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
    automated match to d3cyoa_
    complexed with tam
  6. Domain d5hfmf1: 5hfm F:539-656 [328047]
    Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
    automated match to d3cyoa_
    complexed with tam
Simian immunodeficiency virus [TaxId:11723] [58073] (10 PDB entries)
1. Domains for 1jpx:
  1. Domain d1jpxa_: 1jpx A: [71783]
    mutant
  2. Domain d1jpxd_: 1jpx D: [71784]
    mutant
  3. Domain d1jpxg_: 1jpx G: [71785]
    mutant
2. Domain for 1jq0:
  - Domain d1jq0a_: 1jq0 A: [71786]
    mutant
3. Domains for 1qbz:
  1. Domain d1qbza_: 1qbz A: [45729]
    ectodomain
    complexed with cl, hg, mrd
  2. Domain d1qbzb_: 1qbz B: [45730]
    ectodomain
    complexed with cl, hg, mrd
  3. Domain d1qbzc_: 1qbz C: [45731]
    ectodomain
    complexed with cl, hg, mrd
4. Domains for 1qce:
  1. Domain d1qcea_: 1qce A: [45750]
    ectodomain
  2. Domain d1qceb_: 1qce B: [45751]
    ectodomain
  3. Domain d1qcec_: 1qce C: [45752]
    ectodomain
5. Domains for 2ezo:
  1. Domain d2ezoa_: 2ezo A: [45747]
    ectodomain
  2. Domain d2ezob_: 2ezo B: [45748]
    ectodomain
  3. Domain d2ezoc_: 2ezo C: [45749]
    ectodomain
6. Domains for 2ezp:
  1. Domain d2ezpa_: 2ezp A: [45735]
    ectodomain
  2. Domain d2ezpb_: 2ezp B: [45736]
    ectodomain
  3. Domain d2ezpc_: 2ezp C: [45737]
    ectodomain
7. Domains for 2ezq:
  1. Domain d2ezqa_: 2ezq A: [45738]
    ectodomain
  2. Domain d2ezqb_: 2ezq B: [45739]
    ectodomain
  3. Domain d2ezqc_: 2ezq C: [45740]
    ectodomain
8. Domains for 2ezr:
  1. Domain d2ezra_: 2ezr A: [45741]
    ectodomain
  2. Domain d2ezrb_: 2ezr B: [45742]
    ectodomain
  3. Domain d2ezrc_: 2ezr C: [45743]
    ectodomain
9. Domains for 2ezs:
  1. Domain d2ezsa_: 2ezs A: [45744]
    ectodomain
  2. Domain d2ezsb_: 2ezs B: [45745]
    ectodomain
  3. Domain d2ezsc_: 2ezs C: [45746]
    ectodomain
10. Domains for 2siv:
  1. Domain d2siv.1: 2siv A:,B: [45732]
  2. Domain d2siv.2: 2siv C:,D: [45733]
  3. Domain d2siv.3: 2siv E:,F: [45734]
Synthetic construct [TaxId:32630] [161260] (1 PDB entry)
- Domain for 2r3c:
  - Domain d2r3ca1: 2r3c A:1-45 [151556]
    automatically matched to d1czqa_
    complexed with cl, yt3
Visna virus [TaxId:11741] [64597] (1 PDB entry)
- Domain for 1jek:
  - Domain d1jek.1: 1jek A:,B: [62920]

More info for Protein Retrovius gp41 protease-resistant core from h.3.2.1: Virus ectodomain

Timeline for Protein Retrovius gp41 protease-resistant core from h.3.2.1: Virus ectodomain:

Protein Retrovius gp41 protease-resistant core from h.3.2.1: Virus ectodomain first appeared (with stable ids) in SCOP 1.55
Protein Retrovius gp41 protease-resistant core from h.3.2.1: Virus ectodomain appears in SCOPe 2.07