Lineage for Protein: Retrovius gp41 protease-resistant core

  1. Root: SCOPe 2.08
  2. 3039230Class h: Coiled coil proteins [57942] (7 folds)
  3. 3040824Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 3042053Superfamily h.3.2: Virus ectodomain [58069] (2 families) (S)
  5. 3042054Family h.3.2.1: Virus ectodomain [58070] (9 proteins)
  6. 3042100Protein Retrovius gp41 protease-resistant core [58071] (4 species)
    coiled coil; biological unit: trimer

Species:

  1. 3042101Human immunodeficiency virus type 1 [TaxId:11676] [58072] (26 PDB entries)
    1. Domain for 1aik:
    2. Domain for 1czq:
      • 3042102Domain d1czqa_: 1czq A: [45720]
        fusion protein between gp41 and GCN4 fragments; complex with a d-peptide inhibitor of HIV-1 entry
        complexed with cl
    3. Domain for 1df4:
    4. Domain for 1df5:
    5. Domain for 1dlb:
    6. Domain for 1env:
    7. Domains for 1f23:
      1. 3042139Domain d1f23a_: 1f23 A: [59602]
      2. 3042140Domain d1f23b_: 1f23 B: [59603]
      3. 3042141Domain d1f23c_: 1f23 C: [59604]
      4. 3042142Domain d1f23d_: 1f23 D: [59605]
      5. 3042143Domain d1f23e_: 1f23 E: [59606]
      6. 3042144Domain d1f23f_: 1f23 F: [59607]
    8. Domain for 1fav:
      • 3042147Domain d1fav.1: 1fav A:,C: [45728]
        fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
    9. Domains for 1gzl:
      1. 3042115Domain d1gzl.1: 1gzl A:,C: [76422]
        fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
        complexed with cl, n2p
      2. 3042116Domain d1gzl.2: 1gzl B:,D: [76423]
        fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
        complexed with cl, n2p
    10. Domain for 1i5x:
    11. Domain for 1i5y:
    12. Domain for 1k33:
    13. Domain for 1k34:
    14. Domain for 1qr8:
    15. Domain for 1qr9:
    16. Domain for 1szt:
    17. Domain for 2ot5:
    18. Domain for 2q3i:
    19. Domains for 2q5u:
      1. 3042104Domain d2q5ua1: 2q5u A:1-45 [139884]
        complexed with cl
      2. 3042105Domain d2q5ub1: 2q5u B:1-45 [139885]
        complexed with cl
      3. 3042106Domain d2q5uc1: 2q5u C:1-45 [139886]
        complexed with cl
    20. Domains for 2q7c:
      1. 3042120Domain d2q7ca1: 2q7c A:1-45 [139887]
        complexed with cl
      2. 3042121Domain d2q7cb1: 2q7c B:1-45 [139888]
        complexed with cl
      3. 3042122Domain d2q7cc1: 2q7c C:1-45 [139889]
        complexed with cl
    21. Domain for 3cp1:
    22. Domain for 3cyo:
    23. Domain for 3k9a:
    24. Domain for 3wfv:
    25. Domains for 5hfl:
      1. 3042127Domain d5hfla1: 5hfl A:546-656 [327953]
        Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
        automated match to d1f23b_
      2. 3042128Domain d5hflb1: 5hfl B:546-656 [328068]
        Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
        automated match to d1f23b_
      3. 3042129Domain d5hflc1: 5hfl C:546-656 [328066]
        Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
        automated match to d1f23b_
      4. 3042130Domain d5hfld1: 5hfl D:546-656 [327941]
        Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
        automated match to d1f23b_
      5. 3042131Domain d5hfle1: 5hfl E:546-653 [327913]
        Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
        automated match to d1f23b_
      6. 3042132Domain d5hflf1: 5hfl F:546-656 [328086]
        Other proteins in same PDB: d5hfla2, d5hflb2, d5hflc2, d5hfld2, d5hfle2, d5hflf2
        automated match to d1f23b_
    26. Domains for 5hfm:
      1. 3042133Domain d5hfma1: 5hfm A:539-656 [328131]
        Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
        automated match to d3cyoa_
        complexed with tam
      2. 3042134Domain d5hfmb1: 5hfm B:539-656 [328074]
        Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
        automated match to d3cyoa_
        complexed with tam
      3. 3042135Domain d5hfmc1: 5hfm C:539-656 [327963]
        Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
        automated match to d3cyoa_
        complexed with tam
      4. 3042136Domain d5hfmd1: 5hfm D:539-656 [328030]
        Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
        automated match to d3cyoa_
        complexed with tam
      5. 3042137Domain d5hfme1: 5hfm E:539-656 [327918]
        Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
        automated match to d3cyoa_
        complexed with tam
      6. 3042138Domain d5hfmf1: 5hfm F:539-656 [328047]
        Other proteins in same PDB: d5hfma2, d5hfmb2, d5hfmc2, d5hfmd2, d5hfme2, d5hfmf2
        automated match to d3cyoa_
        complexed with tam
  2. 3042148Simian immunodeficiency virus [TaxId:11723] [58073] (10 PDB entries)
    1. Domains for 1jpx:
      1. 3042156Domain d1jpxa_: 1jpx A: [71783]
        mutant
      2. 3042157Domain d1jpxd_: 1jpx D: [71784]
        mutant
      3. 3042158Domain d1jpxg_: 1jpx G: [71785]
        mutant
    2. Domain for 1jq0:
    3. Domains for 1qbz:
      1. 3042149Domain d1qbza_: 1qbz A: [45729]
        ectodomain
        complexed with cl, hg, mrd
      2. 3042150Domain d1qbzb_: 1qbz B: [45730]
        ectodomain
        complexed with cl, hg, mrd
      3. 3042151Domain d1qbzc_: 1qbz C: [45731]
        ectodomain
        complexed with cl, hg, mrd
    4. Domains for 1qce:
      1. 3042168Domain d1qcea_: 1qce A: [45750]
        ectodomain
      2. 3042169Domain d1qceb_: 1qce B: [45751]
        ectodomain
      3. 3042170Domain d1qcec_: 1qce C: [45752]
        ectodomain
    5. Domains for 2ezo:
      1. 3042174Domain d2ezoa_: 2ezo A: [45747]
        ectodomain
      2. 3042175Domain d2ezob_: 2ezo B: [45748]
        ectodomain
      3. 3042176Domain d2ezoc_: 2ezo C: [45749]
        ectodomain
    6. Domains for 2ezp:
      1. 3042171Domain d2ezpa_: 2ezp A: [45735]
        ectodomain
      2. 3042172Domain d2ezpb_: 2ezp B: [45736]
        ectodomain
      3. 3042173Domain d2ezpc_: 2ezp C: [45737]
        ectodomain
    7. Domains for 2ezq:
      1. 3042165Domain d2ezqa_: 2ezq A: [45738]
        ectodomain
      2. 3042166Domain d2ezqb_: 2ezq B: [45739]
        ectodomain
      3. 3042167Domain d2ezqc_: 2ezq C: [45740]
        ectodomain
    8. Domains for 2ezr:
      1. 3042159Domain d2ezra_: 2ezr A: [45741]
        ectodomain
      2. 3042160Domain d2ezrb_: 2ezr B: [45742]
        ectodomain
      3. 3042161Domain d2ezrc_: 2ezr C: [45743]
        ectodomain
    9. Domains for 2ezs:
      1. 3042162Domain d2ezsa_: 2ezs A: [45744]
        ectodomain
      2. 3042163Domain d2ezsb_: 2ezs B: [45745]
        ectodomain
      3. 3042164Domain d2ezsc_: 2ezs C: [45746]
        ectodomain
    10. Domains for 2siv:
      1. 3042153Domain d2siv.1: 2siv A:,B: [45732]
      2. 3042154Domain d2siv.2: 2siv C:,D: [45733]
      3. 3042155Domain d2siv.3: 2siv E:,F: [45734]
  3. 3042177Synthetic construct [TaxId:32630] [161260] (1 PDB entry)
  4. 3042179Visna virus [TaxId:11741] [64597] (1 PDB entry)

More info for Protein Retrovius gp41 protease-resistant core from h.3.2.1: Virus ectodomain

Timeline for Protein Retrovius gp41 protease-resistant core from h.3.2.1: Virus ectodomain: