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Lineage for Protein: Rubredoxin

1. Root: SCOP 1.75B

2. Class g: Small proteins [56992] (90 folds)

3. Fold g.41: Rubredoxin-like [57769] (17 superfamilies) metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2

4. Superfamily g.41.5: Rubredoxin-like [57802] (3 families)

5. Family g.41.5.1: Rubredoxin [57803] (5 protein domains)

6. Protein Rubredoxin [57804] (8 species)

Species:

1. Clostridium pasteurianum [TaxId:1501] [57808] (23 PDB entries) Uniprot P00268

   1. Domain for 1b13:

      • Domain d1b13a_: 1b13 A: [45227] complexed with fe; mutant

   2. Domain for 1b2j:

      • Domain d1b2ja_: 1b2j A: [45231] complexed with fe; mutant

   3. Domains for 1b2o:

      1. Domain d1b2oa_: 1b2o A: [45233] complexed with fe; mutant

      2. Domain d1b2ob_: 1b2o B: [45234] complexed with fe; mutant

   4. Domain for 1be7:

      • Domain d1be7a_: 1be7 A: [45232] complexed with fe; mutant

   5. Domain for 1bfy:

      • Domain d1bfya_: 1bfy A: [45235] complexed with fe

   6. Domains for 1c09:

      1. Domain d1c09a_: 1c09 A: [45228] complexed with fe

      2. Domain d1c09b_: 1c09 B: [45229] complexed with fe

      3. Domain d1c09c_: 1c09 C: [45230] complexed with fe

   7. Domain for 1fhh:

      • Domain d1fhha_: 1fhh A: [59836] complexed with fe

   8. Domain for 1fhm:

      • Domain d1fhma_: 1fhm A: [59841] complexed with fe2

   9. Domain for 1irn:

      • Domain d1irna_: 1irn A: [45224] complexed with zn

   10. Domain for 1iro:

       • Domain d1iroa_: 1iro A: [45223] complexed with fe

   11. Domain for 1r0f:

       • Domain d1r0fa_: 1r0f A: [96725] gallium-substituted complexed with ga

   12. Domain for 1r0g:

       • Domain d1r0ga_: 1r0g A: [96726] mercury-substituted complexed with hg

   13. Domain for 1r0h:

       • Domain d1r0ha_: 1r0h A: [96727] cobalt-substituted complexed with co

   14. Domain for 1r0i:

       • Domain d1r0ia_: 1r0i A: [96728] cadmium-substituted complexed with cd

   15. Domain for 1r0j:

       • Domain d1r0ja_: 1r0j A: [96729] nickel-substituted complexed with ni

   16. Domain for 1smm:

       • Domain d1smma_: 1smm A: [98923] complexed with fe, so4; mutant

   17. Domain for 1smu:

       • Domain d1smua_: 1smu A: [98924] complexed with fe2; mutant

   18. Domain for 1smw:

       • Domain d1smwa_: 1smw A: [98925] complexed with fe2; mutant

   19. Domains for 1t9o:

       1. Domain d1t9oa_: 1t9o A: [112366] complexed with fe

       2. Domain d1t9ob_: 1t9o B: [112367] complexed with fe

       3. Domain d1t9oc_: 1t9o C: [112368] complexed with fe

   20. Domains for 1t9p:

       1. Domain d1t9pa_: 1t9p A: [112369] complexed with fe

       2. Domain d1t9pb_: 1t9p B: [112370] complexed with fe

       3. Domain d1t9pc_: 1t9p C: [112371] complexed with fe

   21. Domain for 1t9q:

       • Domain d1t9qa_: 1t9q A: [112372] complexed with fe

   22. Domain for 4rxn:

       • Domain d4rxna_: 4rxn A: [45226] complexed with fe

   23. Domain for 5rxn:

       • Domain d5rxna_: 5rxn A: [45225] complexed with fe

2. Desulfovibrio desulfuricans, strain 27774 [TaxId:876] [57807] (1 PDB entry)

   • Domain for 6rxn:

     • Domain d6rxna_: 6rxn A: [45222] complexed with fe

3. Desulfovibrio gigas [TaxId:879] [57806] (3 PDB entries)

   1. Domain for 1e8j:

      • Domain d1e8ja_: 1e8j A: [64796]

   2. Domain for 1rdg:

      • Domain d1rdga_: 1rdg A: [45221] complexed with fe, for

   3. Domain for 2dsx:

      • Domain d2dsxa_: 2dsx A: [131699] automated match to d1e8ja_ complexed with fe

4. Desulfovibrio vulgaris [TaxId:881] [57805] (7 PDB entries)

   1. Domain for 1rb9:

      • Domain d1rb9a_: 1rb9 A: [45214] complexed with fe2, so4

   2. Domain for 1rdv:

      • Domain d1rdva_: 1rdv A: [45220] complexed with fe

   3. Domain for 2kkd:

      • Domain d2kkda1: 2kkd A:1-52 [166260] automatically matched to d1rb9a_ complexed with ni

   4. Domain for 2ql0:

      • Domain d2ql0a1: 2ql0 A:1-52 [150858] automatically matched to d1rb9a_ complexed with zn

   5. Domains for 2rdv:

      1. Domain d2rdva_: 2rdv A: [45217] complexed with fe

      2. Domain d2rdvb_: 2rdv B: [45218] complexed with fe

      3. Domain d2rdvc_: 2rdv C: [45219] complexed with fe

   6. Domain for 7rxn:

      • Domain d7rxna_: 7rxn A: [45216] complexed with fe, so4

   7. Domain for 8rxn:

      • Domain d8rxna_: 8rxn A: [45215] complexed with fe, so4

5. Guillardia theta [TaxId:55529] [57810] (2 PDB entries)

   1. Domain for 1dx8:

      • Domain d1dx8a_: 1dx8 A: [45243] complexed with zn

   2. Domain for 1h7v:

      • Domain d1h7va_: 1h7v A: [65713] complexed with zn

6. Pyrococcus abyssi [TaxId:29292] [188135] (3 PDB entries)

   1. Domain for 1yk4:

      • Domain d1yk4a_: 1yk4 A: [162231] automated match to d1bq8a_ complexed with fe

   2. Domains for 1yk5:

      1. Domain d1yk5a_: 1yk5 A: [162232] automated match to d1bq8a_ complexed with fe

      2. Domain d1yk5b_: 1yk5 B: [162233] automated match to d1bq8a_ complexed with fe

      3. Domain d1yk5c_: 1yk5 C: [162234] automated match to d1bq8a_ complexed with fe

      4. Domain d1yk5d_: 1yk5 D: [162235] automated match to d1bq8a_ complexed with fe

   3. Domain for 2pya:

      • Domain d2pyaa_: 2pya A: [167337] automated match to d1bq8a_ complexed with fe, na

7. Pyrococcus furiosus [TaxId:186497] [189847] (1 PDB entry)

   • Domain for 3ss2:

     • Domain d3ss2a_: 3ss2 A: [185507] automated match to d1bq8a_ complexed with dod, fe

8. Pyrococcus furiosus [TaxId:2261] [57809] (24 PDB entries) Uniprot P24297

   1. Domain for 1bq8:

      • Domain d1bq8a_: 1bq8 A: [45237] complexed with fe; mutant

   2. Domain for 1bq9:

      • Domain d1bq9a_: 1bq9 A: [45238] complexed with fe; mutant

   3. Domain for 1brf:

      • Domain d1brfa_: 1brf A: [45236] complexed with fe

   4. Domain for 1caa:

      • Domain d1caaa_: 1caa A: [45239] complexed with fe

   5. Domain for 1cad:

      • Domain d1cada_: 1cad A: [45240] complexed with fe

   6. Domain for 1iu5:

      • Domain d1iu5a_: 1iu5 A: [71434] complexed with dod, fe; mutant

   7. Domain for 1iu6:

      • Domain d1iu6a_: 1iu6 A: [71435] complexed with dod, fe; mutant

   8. Domain for 1qcv:

      • Domain d1qcva_: 1qcv A: [45241] variant pfrd-xc4 folds without iron

   9. Domain for 1rwd:

      • Domain d1rwda_: 1rwd A: [97977] mutant

   10. Domain for 1vcx:

       • Domain d1vcxa_: 1vcx A: [108516] complexed with dod, fe

   11. Domain for 1zrp:

       • Domain d1zrpa_: 1zrp A: [45242] zn-substituted complexed with zn

   12. Domains for 2pvx:

       1. Domain d2pvxa_: 2pvx A: [167289] automated match to d1bq8a_ complexed with zn

       2. Domain d2pvxb_: 2pvx B: [167290] automated match to d1bq8a_ complexed with zn

       3. Domain d2pvxc_: 2pvx C: [167291] automated match to d1bq8a_ complexed with zn

       4. Domain d2pvxd_: 2pvx D: [167292] automated match to d1bq8a_ complexed with zn

       5. Domain d2pvxe_: 2pvx E: [167293] automated match to d1bq8a_ complexed with zn

       6. Domain d2pvxf_: 2pvx F: [167294] automated match to d1bq8a_ complexed with zn

       7. Domain d2pvxg_: 2pvx G: [167295] automated match to d1bq8a_ complexed with zn

       8. Domain d2pvxh_: 2pvx H: [167296] automated match to d1bq8a_ complexed with zn

   13. Domain for 3kyu:

       • Domain d3kyua_: 3kyu A: [179814] automated match to d1bq8a_ complexed with dod, fe

   14. Domain for 3kyv:

       • Domain d3kyva_: 3kyv A: [179815] automated match to d1bq8a_ complexed with dod, fe

   15. Domain for 3kyw:

       • Domain d3kywa_: 3kyw A: [179816] automated match to d1bq8a_ complexed with dod, fe

   16. Domain for 3kyx:

       • Domain d3kyxa_: 3kyx A: [179817] automated match to d1bq8a_ complexed with dod, fe

   17. Domain for 3kyy:

       • Domain d3kyya_: 3kyy A: [179818] automated match to d1bq8a_ complexed with dod, fe

   18. Domain for 3ryg:

       • Domain d3ryga_: 3ryg A: [185206] automated match to d1bq8a_ complexed with dod, fe

   19. Domain for 3rz6:

       • Domain d3rz6a_: 3rz6 A: [185223] automated match to d1bq8a_ complexed with dod, fe

   20. Domain for 3rzt:

       • Domain d3rzta_: 3rzt A: [185229] automated match to d1bq8a_ complexed with dod, fe

   21. Domain for 4ar3:

       • Domain d4ar3a_: 4ar3 A: [192591] automated match to d3kyua_ complexed with d3o, d8u, dod, fe

   22. Domain for 4ar4:

       • Domain d4ar4a_: 4ar4 A: [192592] automated match to d3kyua_ complexed with d3o, d8u, dod, fe

   23. Domain for 4ar5:

       • Domain d4ar5a_: 4ar5 A: [192573] automated match to d3kyua_ complexed with dod, fe

   24. Domain for 4ar6:

       • Domain d4ar6a_: 4ar6 A: [192572] automated match to d3kyua_ complexed with dod, fe

More info for Protein Rubredoxin from g.41.5.1: Rubredoxin

Timeline for Protein Rubredoxin from g.41.5.1: Rubredoxin :

Protein Rubredoxin from g.41.5.1: Rubredoxin appears in SCOP 1.75A

Copyright © 1994-2013 The SCOP and Astral authors scop@mrc-lmb.cam.ac.uk and astral@compbio.berkeley.edu