SCOPe 2.06: Family g.41.5.1: Rubredoxin

Lineage for Family g.41.5.1: Rubredoxin

1. Root: SCOPe 2.06

2. Class g: Small proteins [56992] (94 folds)

3. Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
   metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2

4. Superfamily g.41.5: Rubredoxin-like [57802] (4 families)

5. Family g.41.5.1: Rubredoxin [57803] (5 proteins)

Proteins:

1. Nigerythrin, C-terminal domain [144194] (1 species)

   • Species Desulfovibrio vulgaris [TaxId:881] [144195] (3 PDB entries)
     Uniprot P30820 167-202

2. Rubredoxin [57804] (8 species)

   1. Species Clostridium pasteurianum [TaxId:1501] [57808] (23 PDB entries)
      Uniprot P00268

   2. Species Desulfovibrio desulfuricans, strain 27774 [TaxId:876] [57807] (1 PDB entry)

   3. Species Desulfovibrio gigas [TaxId:879] [57806] (3 PDB entries)

   4. Species Desulfovibrio vulgaris [TaxId:881] [57805] (8 PDB entries)

   5. Species Guillardia theta [TaxId:55529] [57810] (2 PDB entries)

   6. Species Pyrococcus abyssi [TaxId:29292] [188135] (3 PDB entries)

   7. Species Pyrococcus furiosus [TaxId:186497] [189847] (1 PDB entry)

   8. Species Pyrococcus furiosus [TaxId:2261] [57809] (28 PDB entries)
      Uniprot P24297

3. Rubrerythrin, C-terminal domain [57811] (2 species)

   1. Species Desulfovibrio vulgaris [TaxId:881] [57812] (10 PDB entries)
      Uniprot P24931

   2. Species Pyrococcus furiosus [TaxId:2261] [103622] (2 PDB entries)

4. Two-iron rubredoxin [103620] (1 species)

   • Species Pseudomonas oleovorans [TaxId:301] [103621] (1 PDB entry)

5. automated matches [190785] (5 species)
   not a true protein

   1. Species Clostridium pasteurianum [TaxId:1501] [188301] (1 PDB entry)

   2. Species Desulfovibrio gigas [TaxId:879] [254890] (1 PDB entry)

   3. Species Mycobacterium ulcerans [TaxId:362242] [255482] (1 PDB entry)

   4. Species Pseudomonas aeruginosa, PA01 [TaxId:208964] [188038] (1 PDB entry)

   5. Species Pyrococcus furiosus [311162] (1 PDB entry)

More info for Family g.41.5.1: Rubredoxin

Timeline for Family g.41.5.1: Rubredoxin:

• Family g.41.5.1: Rubredoxin first appeared (with stable ids) in SCOP 1.55
  
• Family g.41.5.1: Rubredoxin appears in SCOPe 2.05
  
• Family g.41.5.1: Rubredoxin appears in SCOPe 2.07
  
• Family g.41.5.1: Rubredoxin appears in the current release, SCOPe 2.08