SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Fold g.41: Rubredoxin-like

  1. Root: SCOPe 2.06
  2. 2229111Class g: Small proteins [56992] (94 folds)
  3. 2235033Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2

Superfamilies:

  1. 2235034g.41.1: Methionyl-tRNA synthetase (MetRS), Zn-domain [57770] (1 family) (S)
  2. 2235049g.41.2: Microbial and mitochondrial ADK, insert "zinc finger" domain [57774] (2 families) (S)
    automatically mapped to Pfam PF05191
  3. 2235106g.41.3: Zinc beta-ribbon [57783] (5 families) (S)
  4. 2235211g.41.4: Casein kinase II beta subunit [57798] (1 family) (S)
    automatically mapped to Pfam PF01214
  5. 2235239g.41.5: Rubredoxin-like [57802] (4 families) (S)
  6. 2235498g.41.6: Hypothetical protein MTH1184 [57821] (1 family) (S)
    contains two CXC motifs
    automatically mapped to Pfam PF09082
  7. 2235504g.41.7: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain [57825] (2 families) (S)
    automatically mapped to Pfam PF02748
  8. 2235651g.41.8: Zn-binding ribosomal proteins [57829] (8 families) (S)
  9. 2235889g.41.9: RNA polymerase subunits [63393] (3 families) (S)
  10. 2235951g.41.10: Zn-finger domain of Sec23/24 [82919] (1 family) (S)
  11. 2235965g.41.11: Ran binding protein zinc finger-like [90209] (2 families) (S)
    contains CxxxxC-x(n)-CxxC zinc-binding site; similar to the Sec23/24 zinc finger domain
  12. 2236005g.41.13: Hypothetical protein Ta0289 C-terminal domain [103623] (1 family) (S)
    contains CxxC-x(n)-CxxxxC zinc-binding site; sequence similarity to NAD-dependent DNA ligase zinc-finger subdomain
  13. 2236011g.41.14: NADH pyrophosphatase intervening domain [116738] (1 family) (S)
    automatically mapped to Pfam PF09297
  14. 2236018g.41.15: NOB1 zinc finger-like [144206] (1 family) (S)
    automatically mapped to Pfam PF08772
  15. 2236023g.41.16: Nop10-like SnoRNP [144210] (1 family) (S)
    automatically mapped to Pfam PF04135
  16. 2236053g.41.17: CSL zinc finger [144217] (2 families) (S)
  17. 2236071g.41.18: YfgJ-like [161187] (1 family) (S)
    duplication: consists of two rubredoxin-like (sub)domains, interlocked together
    automatically mapped to Pfam PF07191

More info for Fold g.41: Rubredoxin-like

Timeline for Fold g.41: Rubredoxin-like: