SCOPe 2.06: Family g.40.1.1: Retrovirus zinc finger-like domains

Lineage for Family g.40.1.1: Retrovirus zinc finger-like domains

1. Root: SCOPe 2.06

2. Class g: Small proteins [56992] (94 folds)

3. Fold g.40: Retrovirus zinc finger-like domains [57755] (1 superfamily)
   metal(zinc)-bound fold

4. Superfamily g.40.1: Retrovirus zinc finger-like domains [57756] (1 family)

5. Family g.40.1.1: Retrovirus zinc finger-like domains [57757] (6 proteins)

Proteins:

1. GAG protein p55 [57758] (1 species)
   • Species Synthetic, based on Human immunodeficiency virus [57759] (1 PDB entry)

2. HIV nucleocapsid [57760] (2 species)
   duplication: two similar zinc-binding motifs

   1. Species Human immunodeficiency virus type 1, different isolates [TaxId:11676] [57761] (12 PDB entries)
      Uniprot P03350 389-429

   2. Species Human immunodeficiency virus type 2 [TaxId:11709] [57762] (1 PDB entry)

3. Nucleic acid binding protein p14 [57767] (1 species)

   • Species Mouse mammary tumor virus [TaxId:11757] [57768] (2 PDB entries)

4. Nucleocapsid protein from mason-pfizer monkey virus (MPMV) [57763] (1 species)

   • Species Mason-pfizer monkey virus [TaxId:11855] [57764] (1 PDB entry)

5. Zinc finger protein ncp10 [57765] (2 species)

   1. Species Human immunodeficiency virus 1 [TaxId:11676] [256394] (1 PDB entry)

   2. Species Moloney murine leukemia virus, MoMLV [TaxId:11801] [57766] (2 PDB entries)
      Uniprot P03332 479-534

6. automated matches [254447] (4 species)
   not a true protein

   1. Species Human immunodeficiency virus type 1 (hxb2 isolate) [TaxId:11706] [315319] (1 PDB entry)

   2. Species Human immunodeficiency virus type 1 [TaxId:11698] [255478] (1 PDB entry)

   3. Species Human immunodeficiency virus type 2 (isolate ghana-1) [TaxId:11717] [255140] (1 PDB entry)

   4. Species Murine leukemia virus [TaxId:11801] [254953] (4 PDB entries)

More info for Family g.40.1.1: Retrovirus zinc finger-like domains

Timeline for Family g.40.1.1: Retrovirus zinc finger-like domains:

• Family g.40.1.1: Retrovirus zinc finger-like domains first appeared (with stable ids) in SCOP 1.55
  
• Family g.40.1.1: Retrovirus zinc finger-like domains appears in SCOPe 2.05
  
• Family g.40.1.1: Retrovirus zinc finger-like domains appears in SCOPe 2.07
  
• Family g.40.1.1: Retrovirus zinc finger-like domains appears in the current release, SCOPe 2.08