SCOP 1.69: Protein: Bacteriorhodopsin

Lineage for Protein: Bacteriorhodopsin

Root: SCOP 1.69
Class f: Membrane and cell surface proteins and peptides [56835] (47 folds)
Fold f.13: Family A G protein-coupled receptor-like [81322] (1 superfamily)
core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
Superfamily f.13.1: Family A G protein-coupled receptor-like [81321] (2 families)
Family f.13.1.1: Bacteriorhodopsin-like [81319] (4 proteins)
Protein Bacteriorhodopsin [56871] (2 species)
a light-driven proton pump

Species:

Archaeon Halobacterium halobium [TaxId:2242] [56872] (3 PDB entries)
1. Domain for 1bm1:
  - Domain d1bm1__: 1bm1 - [43402]
2. Domain for 1brd:
  - Domain d1brd__: 1brd - [43404]
3. Domain for 2brd:
  - Domain d2brd__: 2brd - [43403]
Archaeon Halobacterium salinarum [TaxId:2242] [56873] (52 PDB entries)
1. Domain for 1ap9:
  - Domain d1ap9__: 1ap9 - [43418]
2. Domain for 1at9:
  - Domain d1at9__: 1at9 - [43424]
3. Domains for 1brr:
  1. Domain d1brra_: 1brr A: [43421]
  2. Domain d1brrb_: 1brr B: [43422]
  3. Domain d1brrc_: 1brr C: [43423]
4. Domain for 1brx:
  - Domain d1brx__: 1brx - [43415]
5. Domain for 1c3w:
  - Domain d1c3wa_: 1c3w A: [43405]
6. Domain for 1c8r:
  - Domain d1c8ra_: 1c8r A: [43407]
7. Domain for 1c8s:
  - Domain d1c8sa_: 1c8s A: [43410]
8. Domains for 1cwq:
  1. Domain d1cwqa_: 1cwq A: [43412]
  2. Domain d1cwqb_: 1cwq B: [43413]
    M intermediate structure (A) superimposed on the ground state structure (B)
9. Domain for 1dze:
  - Domain d1dzea_: 1dze A: [43419]
    M intermediate trapped at 100K
10. Domains for 1e0p:
  1. Domain d1e0pa_: 1e0p A: [43416]
  2. Domain d1e0pb_: 1e0p B: [43417]
    L intermediate
11. Domain for 1f4z:
  - Domain d1f4za_: 1f4z A: [43408]
12. Domain for 1f50:
  - Domain d1f50a_: 1f50 A: [43406]
13. Domain for 1fbb:
  - Domain d1fbba_: 1fbb A: [43425]
14. Domain for 1fbk:
  - Domain d1fbka_: 1fbk A: [43426]
15. Domain for 1iw6:
  - Domain d1iw6a_: 1iw6 A: [76865]
    ground state
16. Domain for 1iw9:
  - Domain d1iw9a_: 1iw9 A: [90711]
17. Domain for 1ixf:
  - Domain d1ixfa_: 1ixf A: [76908]
    K intermediate
18. Domain for 1jv6:
  - Domain d1jv6a_: 1jv6 A: [67346]
19. Domain for 1jv7:
  - Domain d1jv7a_: 1jv7 A: [67347]
20. Domain for 1kg8:
  - Domain d1kg8a_: 1kg8 A: [68579]
    an early-M intermediate
21. Domain for 1kg9:
  - Domain d1kg9a_: 1kg9 A: [68580]
    a "mock-trapped" early-M intermediate
22. Domain for 1kgb:
  - Domain d1kgba_: 1kgb A: [68581]
23. Domains for 1kme:
  1. Domain d1kmea_: 1kme A: [68692]
  2. Domain d1kmeb_: 1kme B: [68693]
24. Domain for 1l0m:
  - Domain d1l0ma_: 1l0m A: [73402]
    a solution structure
25. Domain for 1m0k:
  - Domain d1m0ka_: 1m0k A: [78344]
    K intermediate
26. Domain for 1m0l:
  - Domain d1m0la_: 1m0l A: [78345]
27. Domain for 1m0m:
  - Domain d1m0ma_: 1m0m A: [78346]
    M1 intermediate
28. Domain for 1mgy:
  - Domain d1mgya_: 1mgy A: [84959]
29. Domain for 1o0a:
  - Domain d1o0aa_: 1o0a A: [86526]
    L intermediate
30. Domain for 1p8h:
  - Domain d1p8ha_: 1p8h A: [87944]
31. Domain for 1p8i:
  - Domain d1p8ia_: 1p8i A: [87945]
32. Domain for 1p8u:
  - Domain d1p8ua_: 1p8u A: [87983]
33. Domains for 1pxr:
  1. Domain d1pxra_: 1pxr A: [95297]
  2. Domain d1pxrb_: 1pxr B: [95298]
34. Domains for 1pxs:
  1. Domain d1pxsa_: 1pxs A: [95299]
  2. Domain d1pxsb_: 1pxs B: [95300]
35. Domains for 1py6:
  1. Domain d1py6a_: 1py6 A: [95327]
  2. Domain d1py6b_: 1py6 B: [95328]
36. Domains for 1q5i:
  1. Domain d1q5ia_: 1q5i A: [95896]
  2. Domain d1q5ib_: 1q5i B: [95897]
37. Domains for 1q5j:
  1. Domain d1q5ja_: 1q5j A: [95898]
  2. Domain d1q5jb_: 1q5j B: [95899]
38. Domain for 1qhj:
  - Domain d1qhja_: 1qhj A: [43409]
39. Domain for 1qko:
  - Domain d1qkoa_: 1qko A: [43414]
40. Domain for 1qkp:
  - Domain d1qkpa_: 1qkp A: [43411]
41. Domain for 1qm8:
  - Domain d1qm8a_: 1qm8 A: [43420]
42. Domain for 1r2n:
  - Domain d1r2na_: 1r2n A: [96873]
43. Domain for 1r84:
  - Domain d1r84a_: 1r84 A: [97218]
44. Domains for 1s51:
  1. Domain d1s51a_: 1s51 A: [98517]
  2. Domain d1s51b_: 1s51 B: [98518]
45. Domains for 1s52:
  1. Domain d1s52a_: 1s52 A: [98519]
  2. Domain d1s52b_: 1s52 B: [98520]
46. Domains for 1s53:
  1. Domain d1s53a_: 1s53 A: [98521]
  2. Domain d1s53b_: 1s53 B: [98522]
47. Domains for 1s54:
  1. Domain d1s54a_: 1s54 A: [98523]
  2. Domain d1s54b_: 1s54 B: [98524]
48. Domain for 1s8j:
  - Domain d1s8ja_: 1s8j A: [105372]
49. Domain for 1s8l:
  - Domain d1s8la_: 1s8l A: [105373]
50. Domain for 1ucq:
  - Domain d1ucqa_: 1ucq A: [99187]
51. Domain for 1vjm:
  - Domain d1vjma_: 1vjm A: [100824]
52. Domain for 2at9:
  - Domain d2at9__: 2at9 - [43427]

More info for Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like

Timeline for Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like:

Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like first appeared (with stable ids) in SCOP 1.55, called Protein Bacteriorhodopsin from f.2.1.1: Seven-helix membrane receptors
Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like appears in SCOP 1.67
Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like appears in SCOP 1.71
Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like appears in the current release, SCOPe 2.08