SCOPe 2.08: Protein: Nickel-iron hydrogenase, small subunit

Lineage for Protein: Nickel-iron hydrogenase, small subunit

Root: SCOPe 2.08
Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
Fold e.19: HydA/Nqo6-like [56769] (1 superfamily)
2 domains: (1) alpa/beta; (2) Fe-S cluster-bound
Superfamily e.19.1: HydA/Nqo6-like [56770] (3 families)
Family e.19.1.1: Nickel-iron hydrogenase, small subunit [56771] (2 proteins)
Protein Nickel-iron hydrogenase, small subunit [56772] (5 species)

Species:

Desulfomicrobium baculatum [TaxId:899] [56776] (1 PDB entry)
- Domain for 1cc1:
  - Domain d1cc1s_: 1cc1 S: [43313]
    Other proteins in same PDB: d1cc1l_
    complexed with fco, fe2, h2s, ni, sf4
Desulfovibrio desulfuricans [TaxId:876] [64510] (1 PDB entry)
- Domains for 1e3d:
  1. Domain d1e3da_: 1e3d A: [59188]
    Other proteins in same PDB: d1e3db_, d1e3dd_
    complexed with f3s, fne, fsx, h2s, mg, sf4
  2. Domain d1e3dc_: 1e3d C: [59190]
    Other proteins in same PDB: d1e3db_, d1e3dd_
    complexed with f3s, fne, fsx, h2s, mg, sf4
Desulfovibrio fructosovorans [TaxId:878] [56775] (1 PDB entry)
- Domain for 1frf:
  - Domain d1frfs_: 1frf S: [43312]
    Other proteins in same PDB: d1frfl_
    complexed with f3s, fe, mg, ni, sf4
Desulfovibrio gigas [TaxId:879] [56773] (2 PDB entries)
1. Domains for 1frv:
  1. Domain d1frva_: 1frv A: [43308]
    Other proteins in same PDB: d1frvb_, d1frvd_
    complexed with f3s, fel, ni, sf4
  2. Domain d1frvc_: 1frv C: [43309]
    Other proteins in same PDB: d1frvb_, d1frvd_
    complexed with f3s, fel, ni, sf4
2. Domains for 2frv:
  1. Domain d2frva_: 2frv A: [43303]
    Other proteins in same PDB: d2frvb_, d2frvd_, d2frvf_, d2frvh_, d2frvj_, d2frvl_
    complexed with f3s, fco, mg, ni, o, sf4
  2. Domain d2frvc_: 2frv C: [43304]
    Other proteins in same PDB: d2frvb_, d2frvd_, d2frvf_, d2frvh_, d2frvj_, d2frvl_
    complexed with f3s, fco, mg, ni, o, sf4
  3. Domain d2frve_: 2frv E: [43305]
    Other proteins in same PDB: d2frvb_, d2frvd_, d2frvf_, d2frvh_, d2frvj_, d2frvl_
    complexed with f3s, fco, mg, ni, o, sf4
  4. Domain d2frvg_: 2frv G: [43306]
    Other proteins in same PDB: d2frvb_, d2frvd_, d2frvf_, d2frvh_, d2frvj_, d2frvl_
    complexed with f3s, fco, mg, ni, o, sf4
  5. Domain d2frvi_: 2frv I: [43307]
    Other proteins in same PDB: d2frvb_, d2frvd_, d2frvf_, d2frvh_, d2frvj_, d2frvl_
    complexed with f3s, fco, mg, ni, o, sf4
  6. Domain d2frvs_: 2frv S: [43302]
    Other proteins in same PDB: d2frvb_, d2frvd_, d2frvf_, d2frvh_, d2frvj_, d2frvl_
    complexed with f3s, fco, mg, ni, o, sf4
Desulfovibrio vulgaris [TaxId:881] [56774] (16 PDB entries)
1. Domain for 1h2a:
  - Domain d1h2as_: 1h2a S: [43311]
    Other proteins in same PDB: d1h2al_
    complexed with f3s, mg, nfe, sf4
2. Domain for 1h2r:
  - Domain d1h2rs_: 1h2r S: [43310]
    Other proteins in same PDB: d1h2rl_
    complexed with f3s, mg, nfe, sf4
3. Domain for 1ubh:
  - Domain d1ubhs_: 1ubh S: [88419]
    Other proteins in same PDB: d1ubhl_
    complexed with cmo, f3s, fne, mg, mpd, sf4
4. Domain for 1ubj:
  - Domain d1ubjs_: 1ubj S: [88421]
    Other proteins in same PDB: d1ubjl_
    complexed with cmo, f3s, fne, mg, sf4
5. Domain for 1ubk:
  - Domain d1ubks_: 1ubk S: [88423]
    Other proteins in same PDB: d1ubkl_
    complexed with cmo, f3s, fne, mg, mpd, sf4
6. Domain for 1ubl:
  - Domain d1ubls_: 1ubl S: [88425]
    Other proteins in same PDB: d1ubll_
    complexed with cmo, f3s, fne, mg, mpd, sf4
7. Domain for 1ubm:
  - Domain d1ubms_: 1ubm S: [88427]
    Other proteins in same PDB: d1ubml_
    complexed with f3s, fne, mg, mpd, sf4
8. Domain for 1ubo:
  - Domain d1ubos_: 1ubo S: [88429]
    Other proteins in same PDB: d1ubol_
    complexed with cmo, f3s, fne, mg, sf4
9. Domain for 1ubr:
  - Domain d1ubrs_: 1ubr S: [88431]
    Other proteins in same PDB: d1ubrl_
    complexed with cmo, f3s, fne, mg, sf4
10. Domain for 1ubt:
  - Domain d1ubts_: 1ubt S: [88433]
    Other proteins in same PDB: d1ubtl_
    complexed with f3s, fne, mg, sf4
11. Domain for 1ubu:
  - Domain d1ubus_: 1ubu S: [88435]
    Other proteins in same PDB: d1ubul_
    complexed with f3s, fne, mg, sf4
12. Domain for 5xle:
  - Domain d5xles_: 5xle S: [353286]
    Other proteins in same PDB: d5xlel_
    automated match to d1ubks_
    complexed with f3s, mg, mpd, nfu, sf4, trs
13. Domain for 5xlf:
  - Domain d5xlfs_: 5xlf S: [353291]
    Other proteins in same PDB: d5xlfl_
    automated match to d1ubks_
    complexed with f3s, mg, mpd, nfv, sf4
14. Domain for 5xlg:
  - Domain d5xlgs_: 5xlg S: [353305]
    Other proteins in same PDB: d5xlgl_
    automated match to d1ubks_
    complexed with f3s, mg, mpd, nfv, sf4, trs
15. Domain for 5xlh:
  - Domain d5xlhs_: 5xlh S: [353288]
    Other proteins in same PDB: d5xlhl_
    automated match to d1ubks_
    complexed with f3s, mg, mpd, nfv, sf4
16. Domain for 5y4n:
  - Domain d5y4ns_: 5y4n S: [355900]
    Other proteins in same PDB: d5y4nl_
    automated match to d1ubks_
    complexed with f3s, mg, mpd, mrd, nfu, sf4, trs

More info for Protein Nickel-iron hydrogenase, small subunit from e.19.1.1: Nickel-iron hydrogenase, small subunit

Timeline for Protein Nickel-iron hydrogenase, small subunit from e.19.1.1: Nickel-iron hydrogenase, small subunit:

Protein Nickel-iron hydrogenase, small subunit from e.19.1.1: Nickel-iron hydrogenase, small subunit first appeared (with stable ids) in SCOP 1.55
Protein Nickel-iron hydrogenase, small subunit from e.19.1.1: Nickel-iron hydrogenase, small subunit appears in SCOPe 2.07