SCOPe 2.08: Protein: Nickel-iron hydrogenase, large subunit

Lineage for Protein: Nickel-iron hydrogenase, large subunit

Root: SCOPe 2.08
Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
3 domains: (1) all-alpha; (2&3) alpha+beta
Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families)
Family e.18.1.1: Nickel-iron hydrogenase, large subunit [56763] (2 proteins)
Protein Nickel-iron hydrogenase, large subunit [56764] (5 species)

Species:

Desulfomicrobium baculatum [TaxId:899] [56768] (1 PDB entry)
- Domain for 1cc1:
  - Domain d1cc1l_: 1cc1 L: [43301]
    Other proteins in same PDB: d1cc1s_
    complexed with fco, fe2, h2s, ni, sf4
Desulfovibrio desulfuricans [TaxId:876] [64509] (1 PDB entry)
- Domains for 1e3d:
  1. Domain d1e3db_: 1e3d B: [59189]
    Other proteins in same PDB: d1e3da_, d1e3dc_
    complexed with f3s, fne, fsx, h2s, mg, sf4
  2. Domain d1e3dd_: 1e3d D: [59191]
    Other proteins in same PDB: d1e3da_, d1e3dc_
    complexed with f3s, fne, fsx, h2s, mg, sf4
Desulfovibrio fructosovorans [TaxId:878] [56767] (1 PDB entry)
- Domain for 1frf:
  - Domain d1frfl_: 1frf L: [43300]
    Other proteins in same PDB: d1frfs_
    complexed with f3s, fe, mg, ni, sf4
Desulfovibrio gigas [TaxId:879] [56765] (3 PDB entries)
1. Domains for 1frv:
  1. Domain d1frvb_: 1frv B: [43296]
    Other proteins in same PDB: d1frva_, d1frvc_
    complexed with f3s, fel, ni, sf4
  2. Domain d1frvd_: 1frv D: [43297]
    Other proteins in same PDB: d1frva_, d1frvc_
    complexed with f3s, fel, ni, sf4
2. Domain for 1yq9:
  - Domain d1yq9h1: 1yq9 H:7-536 [144716]
    Other proteins in same PDB: d1yq9a_, d1yq9b_, d1yq9i_
    complexed with f3s, fco, gol, h2s, mg, ni, per, sf4
3. Domains for 2frv:
  1. Domain d2frvb_: 2frv B: [43291]
    Other proteins in same PDB: d2frva_, d2frvc_, d2frve_, d2frvg_, d2frvi_, d2frvs_
    complexed with f3s, fco, mg, ni, o, sf4
  2. Domain d2frvd_: 2frv D: [43292]
    Other proteins in same PDB: d2frva_, d2frvc_, d2frve_, d2frvg_, d2frvi_, d2frvs_
    complexed with f3s, fco, mg, ni, o, sf4
  3. Domain d2frvf_: 2frv F: [43293]
    Other proteins in same PDB: d2frva_, d2frvc_, d2frve_, d2frvg_, d2frvi_, d2frvs_
    complexed with f3s, fco, mg, ni, o, sf4
  4. Domain d2frvh_: 2frv H: [43294]
    Other proteins in same PDB: d2frva_, d2frvc_, d2frve_, d2frvg_, d2frvi_, d2frvs_
    complexed with f3s, fco, mg, ni, o, sf4
  5. Domain d2frvj_: 2frv J: [43295]
    Other proteins in same PDB: d2frva_, d2frvc_, d2frve_, d2frvg_, d2frvi_, d2frvs_
    complexed with f3s, fco, mg, ni, o, sf4
  6. Domain d2frvl_: 2frv L: [43290]
    Other proteins in same PDB: d2frva_, d2frvc_, d2frve_, d2frvg_, d2frvi_, d2frvs_
    complexed with f3s, fco, mg, ni, o, sf4
Desulfovibrio vulgaris [TaxId:881] [56766] (11 PDB entries)
1. Domain for 1h2a:
  - Domain d1h2al_: 1h2a L: [43299]
    Other proteins in same PDB: d1h2as_
    complexed with f3s, mg, nfe, sf4
2. Domain for 1h2r:
  - Domain d1h2rl_: 1h2r L: [43298]
    Other proteins in same PDB: d1h2rs_
    complexed with f3s, mg, nfe, sf4
3. Domain for 1ubh:
  - Domain d1ubhl_: 1ubh L: [88418]
    Other proteins in same PDB: d1ubhs_
    complexed with cmo, f3s, fne, mg, mpd, sf4
4. Domain for 1ubj:
  - Domain d1ubjl_: 1ubj L: [88420]
    Other proteins in same PDB: d1ubjs_
    complexed with cmo, f3s, fne, mg, sf4
5. Domain for 1ubk:
  - Domain d1ubkl_: 1ubk L: [88422]
    Other proteins in same PDB: d1ubks_
    complexed with cmo, f3s, fne, mg, mpd, sf4
6. Domain for 1ubl:
  - Domain d1ubll_: 1ubl L: [88424]
    Other proteins in same PDB: d1ubls_
    complexed with cmo, f3s, fne, mg, mpd, sf4
7. Domain for 1ubm:
  - Domain d1ubml_: 1ubm L: [88426]
    Other proteins in same PDB: d1ubms_
    complexed with f3s, fne, mg, mpd, sf4
8. Domain for 1ubo:
  - Domain d1ubol_: 1ubo L: [88428]
    Other proteins in same PDB: d1ubos_
    complexed with cmo, f3s, fne, mg, sf4
9. Domain for 1ubr:
  - Domain d1ubrl_: 1ubr L: [88430]
    Other proteins in same PDB: d1ubrs_
    complexed with cmo, f3s, fne, mg, sf4
10. Domain for 1ubt:
  - Domain d1ubtl_: 1ubt L: [88432]
    Other proteins in same PDB: d1ubts_
    complexed with f3s, fne, mg, sf4
11. Domain for 1ubu:
  - Domain d1ubul_: 1ubu L: [88434]
    Other proteins in same PDB: d1ubus_
    complexed with f3s, fne, mg, sf4

More info for Protein Nickel-iron hydrogenase, large subunit from e.18.1.1: Nickel-iron hydrogenase, large subunit

Timeline for Protein Nickel-iron hydrogenase, large subunit from e.18.1.1: Nickel-iron hydrogenase, large subunit:

Protein Nickel-iron hydrogenase, large subunit from e.18.1.1: Nickel-iron hydrogenase, large subunit first appeared (with stable ids) in SCOP 1.55
Protein Nickel-iron hydrogenase, large subunit from e.18.1.1: Nickel-iron hydrogenase, large subunit appears in SCOPe 2.07