SCOPe 2.08: Protein: DNA Gyrase A

Lineage for Protein: DNA Gyrase A

Root: SCOPe 2.08
Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
Fold e.11: Type II DNA topoisomerase C-terminal domain-like [56718] (1 superfamily)
4 domains: (1) toprim alpha/beta; (2) "winged helix"-like; (3) alpha+beta; (4) all-alpha
Superfamily e.11.1: Type II DNA topoisomerase C-terminal domain-like [56719] (2 families)
Family e.11.1.1: Type II DNA topoisomerase C-terminal domain-like [56720] (3 proteins)
domain 2 contains the catalytic tyrosine residue
Protein DNA Gyrase A [56723] (2 species)

Species:

Escherichia coli [TaxId:562] [56724] (5 PDB entries)
1. Domain for 1ab4:
  - Domain d1ab4a_: 1ab4 A: [43251]
    fragment lacking toprim domain 1
2. Domains for 1x75:
  1. Domain d1x75a1: 1x75 A:363-494 [144576]
    Other proteins in same PDB: d1x75c_, d1x75d_
    CcdB-interacting subdomain only
    fragment; missing more than one-third of the common structure and/or sequence
  2. Domain d1x75b_: 1x75 B: [144577]
    Other proteins in same PDB: d1x75c_, d1x75d_
    automated match to d1x75a1
    fragment; missing more than one-third of the common structure and/or sequence
3. Domain for 3nuh:
  - Domain d3nuha_: 3nuh A: [248033]
    Other proteins in same PDB: d3nuhb1, d3nuhb2
    complexed with mg
4. Domains for 4ckk:
  1. Domain d4ckka_: 4ckk A: [237544]
    automated match to d1ab4a_
  2. Domain d4ckkb_: 4ckk B: [237545]
    automated match to d1ab4a_
  3. Domain d4ckkc_: 4ckk C: [237546]
    automated match to d1ab4a_
  4. Domain d4ckkd_: 4ckk D: [237547]
    automated match to d1ab4a_
5. Domains for 4ckl:
  1. Domain d4ckla_: 4ckl A: [237542]
    automated match to d1ab4a_
    complexed with sm8
  2. Domain d4cklb_: 4ckl B: [237543]
    automated match to d1ab4a_
    complexed with sm8
Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [254846] (3 PDB entries)
1. Domains for 3foe:
  1. Domain d3foea_: 3foe A: [246173]
    Other proteins in same PDB: d3foec_, d3foed_
    protein/DNA complex; complexed with nfx
  2. Domain d3foeb_: 3foe B: [246174]
    Other proteins in same PDB: d3foec_, d3foed_
    protein/DNA complex; complexed with nfx
2. Domains for 3k9f:
  1. Domain d3k9fa_: 3k9f A: [212241]
    Other proteins in same PDB: d3k9fc_, d3k9fd_
    protein/DNA complex; complexed with lfx, mg
  2. Domain d3k9fb_: 3k9f B: [212242]
    Other proteins in same PDB: d3k9fc_, d3k9fd_
    protein/DNA complex; complexed with lfx, mg
3. Domains for 3ksb:
  1. Domain d3ksba_: 3ksb A: [247260]
    Other proteins in same PDB: d3ksbc_, d3ksbd_
    protein/DNA complex; complexed with mg
  2. Domain d3ksbb_: 3ksb B: [247261]
    Other proteins in same PDB: d3ksbc_, d3ksbd_
    protein/DNA complex; complexed with mg

More info for Protein DNA Gyrase A from e.11.1.1: Type II DNA topoisomerase C-terminal domain-like

Timeline for Protein DNA Gyrase A from e.11.1.1: Type II DNA topoisomerase C-terminal domain-like:

Protein DNA Gyrase A from e.11.1.1: Type II DNA topoisomerase C-terminal domain-like first appeared (with stable ids) in SCOP 1.55, called Protein DNA Gyrase A from e.11.1.1: Type II DNA topoisomerase
Protein DNA Gyrase A from e.11.1.1: Type II DNA topoisomerase C-terminal domain-like appears in SCOPe 2.07