SCOPe 2.06: Species: Hepatitis C virus [TaxId: 11103]

Lineage for Species: Hepatitis C virus [TaxId: 11103]

Root: SCOPe 2.06
Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)
Protein Viral RNA polymerase [56695] (18 species)
Species Hepatitis C virus [TaxId:11103] [56697] (72 PDB entries)

PDB entries in Species: Hepatitis C virus [TaxId: 11103]:

Domain(s) for 1c2p:
1. Domain d1c2pa1: 1c2p A:3-563 [43117]
  Other proteins in same PDB: d1c2pa2, d1c2pb2
2. Domain d1c2pb1: 1c2p B:3-566 [43118]
  Other proteins in same PDB: d1c2pa2, d1c2pb2
Domain(s) for 1csj:
1. Domain d1csja_: 1csj A: [43120]
2. Domain d1csjb_: 1csj B: [43121]
Domain(s) for 1gx5:
- Domain d1gx5a_: 1gx5 A: [70682]
  protein/RNA complex; complexed with gtp, mn
Domain(s) for 1gx6:
- Domain d1gx6a_: 1gx6 A: [70683]
  protein/RNA complex; complexed with mn, utp
Domain(s) for 1nb4:
1. Domain d1nb4a_: 1nb4 A: [85509]
2. Domain d1nb4b_: 1nb4 B: [85510]
Domain(s) for 1nb6:
1. Domain d1nb6a_: 1nb6 A: [85511]
  protein/RNA complex; complexed with mn, utp
2. Domain d1nb6b_: 1nb6 B: [85512]
  protein/RNA complex; complexed with mn, utp
Domain(s) for 1nb7:
1. Domain d1nb7a_: 1nb7 A: [85513]
  protein/RNA complex; complexed with mn
2. Domain d1nb7b_: 1nb7 B: [85514]
  protein/RNA complex; complexed with mn
Domain(s) for 1nhu:
1. Domain d1nhua_: 1nhu A: [85723]
  protein/RNA complex; complexed with 153
2. Domain d1nhub_: 1nhu B: [85724]
  protein/RNA complex; complexed with 153
Domain(s) for 1nhv:
1. Domain d1nhva_: 1nhv A: [85725]
  protein/RNA complex; complexed with 154
2. Domain d1nhvb_: 1nhv B: [85726]
  protein/RNA complex; complexed with 154
Domain(s) for 1os5:
- Domain d1os5a_: 1os5 A: [93475]
  protein/RNA complex; complexed with nh1
Domain(s) for 1quv:
- Domain d1quva_: 1quv A: [43119]
Domain(s) for 2brk:
- Domain d2brka_: 2brk A: [129001]
  automated match to d1gx5a_
  protein/RNA complex; complexed with cmf, mn
Domain(s) for 2brl:
- Domain d2brla_: 2brl A: [203633]
  automated match to d1gx5a_
  protein/RNA complex; complexed with mn, poo
Domain(s) for 2fvc:
1. Domain d2fvca_: 2fvc A: [164476]
  automated match to d1nb4a_
  complexed with 888
2. Domain d2fvcb_: 2fvc B: [164477]
  automated match to d1nb4a_
  complexed with 888
Domain(s) for 2hai:
- Domain d2haia_: 2hai A: [165036]
  automated match to d1nb4a_
  protein/RNA complex; complexed with pfi
Domain(s) for 2qe2:
1. Domain d2qe2a_: 2qe2 A: [167555]
  automated match to d1nb4a_
  complexed with 452
2. Domain d2qe2b_: 2qe2 B: [167556]
  automated match to d1nb4a_
  complexed with 452
Domain(s) for 2qe5:
1. Domain d2qe5a_: 2qe5 A: [167559]
  automated match to d1nb4a_
  complexed with 617
2. Domain d2qe5b_: 2qe5 B: [167560]
  automated match to d1nb4a_
  complexed with 617
3. Domain d2qe5c_: 2qe5 C: [167561]
  automated match to d1nb4a_
  complexed with 617
4. Domain d2qe5d_: 2qe5 D: [167562]
  automated match to d1nb4a_
  complexed with 617
Domain(s) for 2who:
1. Domain d2whoa_: 2who A: [206824]
  automated match to d1gx5a_
  protein/RNA complex; complexed with mn, vgi
2. Domain d2whob_: 2who B: [206825]
  automated match to d1gx5a_
  protein/RNA complex; complexed with mn, vgi
Domain(s) for 2wrm:
- Domain d2wrma_: 2wrm A: [206983]
  automated match to d1gx5a_
  complexed with qq3
Domain(s) for 2zku:
1. Domain d2zkua_: 2zku A: [171292]
  automated match to d1nb4a_
  complexed with acy, gol
2. Domain d2zkub_: 2zku B: [171293]
  automated match to d1nb4a_
  complexed with acy, gol
3. Domain d2zkuc_: 2zku C: [171294]
  automated match to d1nb4a_
  complexed with acy, gol
4. Domain d2zkud_: 2zku D: [171295]
  automated match to d1nb4a_
  complexed with acy, gol
Domain(s) for 3ciz:
1. Domain d3ciza1: 3ciz A:2-563 [173264]
  Other proteins in same PDB: d3ciza2, d3cizb2
  automated match to d1nb4a_
  protein/RNA complex; complexed with sx1, zn
2. Domain d3cizb1: 3ciz B:2-564 [173265]
  Other proteins in same PDB: d3ciza2, d3cizb2
  automated match to d1nb4a_
  protein/RNA complex; complexed with sx1, zn
Domain(s) for 3cj0:
1. Domain d3cj0a1: 3cj0 A:2-563 [173266]
  Other proteins in same PDB: d3cj0a2, d3cj0b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with sx2
2. Domain d3cj0b1: 3cj0 B:2-563 [173267]
  Other proteins in same PDB: d3cj0a2, d3cj0b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with sx2
Domain(s) for 3cj2:
1. Domain d3cj2a1: 3cj2 A:2-562 [173268]
  Other proteins in same PDB: d3cj2a2, d3cj2b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with ni, sx3
2. Domain d3cj2b1: 3cj2 B:2-562 [173269]
  Other proteins in same PDB: d3cj2a2, d3cj2b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with ni, sx3
Domain(s) for 3cj3:
1. Domain d3cj3a1: 3cj3 A:2-563 [173270]
  Other proteins in same PDB: d3cj3a2, d3cj3b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with ni, sx4
2. Domain d3cj3b1: 3cj3 B:2-563 [173271]
  Other proteins in same PDB: d3cj3a2, d3cj3b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with ni, sx4
Domain(s) for 3cj4:
1. Domain d3cj4a1: 3cj4 A:2-562 [173272]
  Other proteins in same PDB: d3cj4a2, d3cj4b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with ni, sx5
2. Domain d3cj4b1: 3cj4 B:2-562 [173273]
  Other proteins in same PDB: d3cj4a2, d3cj4b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with ni, sx5
Domain(s) for 3cj5:
1. Domain d3cj5a1: 3cj5 A:2-563 [173274]
  Other proteins in same PDB: d3cj5a2, d3cj5b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with sx6
2. Domain d3cj5b1: 3cj5 B:2-564 [173275]
  Other proteins in same PDB: d3cj5a2, d3cj5b2
  automated match to d1nb4a_
  protein/RNA complex; complexed with sx6
Domain(s) for 3frz:
- Domain d3frza_: 3frz A: [176007]
  automated match to d1nb4a_
  protein/RNA complex; complexed with ag0, ag6, bme
Domain(s) for 3h59:
1. Domain d3h59a1: 3h59 A:2-562 [177195]
  Other proteins in same PDB: d3h59a2, d3h59b2
  automated match to d1nb4a_
  complexed with h59
2. Domain d3h59b1: 3h59 B:2-562 [177196]
  Other proteins in same PDB: d3h59a2, d3h59b2
  automated match to d1nb4a_
  complexed with h59
Domain(s) for 3h5s:
1. Domain d3h5sa1: 3h5s A:2-562 [177201]
  Other proteins in same PDB: d3h5sa2, d3h5sb2
  automated match to d1nb4a_
  complexed with h5s
2. Domain d3h5sb1: 3h5s B:2-562 [177202]
  Other proteins in same PDB: d3h5sa2, d3h5sb2
  automated match to d1nb4a_
  complexed with h5s
Domain(s) for 3h5u:
1. Domain d3h5ua1: 3h5u A:2-563 [177203]
  Other proteins in same PDB: d3h5ua2, d3h5ub2
  automated match to d1nb4a_
  complexed with h5u
2. Domain d3h5ub1: 3h5u B:2-563 [177204]
  Other proteins in same PDB: d3h5ua2, d3h5ub2
  automated match to d1nb4a_
  complexed with h5u
Domain(s) for 3hky:
1. Domain d3hkya1: 3hky A:1-563 [177660]
  Other proteins in same PDB: d3hkya2
  automated match to d1nb4a_
  complexed with cl, ix6, so4
2. Domain d3hkyb_: 3hky B: [177661]
  Other proteins in same PDB: d3hkya2
  automated match to d1nb4a_
  complexed with cl, ix6, so4
Domain(s) for 3lkh:
1. Domain d3lkha_: 3lkh A: [180342]
  automated match to d1nb4a_
  complexed with lt6
2. Domain d3lkhb_: 3lkh B: [180343]
  automated match to d1nb4a_
  complexed with lt6
Domain(s) for 3mf5:
1. Domain d3mf5a1: 3mf5 A:2-562 [181043]
  Other proteins in same PDB: d3mf5a2, d3mf5b2
  automated match to d1c2pb_
  complexed with gol, hjz
2. Domain d3mf5b1: 3mf5 B:2-562 [181044]
  Other proteins in same PDB: d3mf5a2, d3mf5b2
  automated match to d1c2pb_
  complexed with gol, hjz
Domain(s) for 3mwv:
1. Domain d3mwva_: 3mwv A: [181653]
  automated match to d1nb4a_
2. Domain d3mwvb_: 3mwv B: [181654]
  automated match to d1nb4a_
Domain(s) for 3mww:
1. Domain d3mwwa_: 3mww A: [181655]
  automated match to d1nb4a_
  complexed with biw, so4
2. Domain d3mwwb_: 3mww B: [181656]
  automated match to d1nb4a_
  complexed with biw, so4
Domain(s) for 3q0z:
1. Domain d3q0za_: 3q0z A: [184133]
  automated match to d1nb4a_
  protein/RNA complex; complexed with 23e, so4
2. Domain d3q0zb_: 3q0z B: [184134]
  automated match to d1nb4a_
  protein/RNA complex; complexed with 23e, so4
Domain(s) for 3qgd:
1. Domain d3qgda_: 3qgd A: [184371]
  automated match to d1nb4a_
  protein/RNA complex; complexed with 23e, 26s, so4
2. Domain d3qgdb_: 3qgd B: [184372]
  automated match to d1nb4a_
  protein/RNA complex; complexed with 23e, 26s, so4
Domain(s) for 3qge:
1. Domain d3qgea_: 3qge A: [248881]
  automated match to d3q0za_
  protein/RNA complex; complexed with 23e, 26f, so4
2. Domain d3qgeb_: 3qge B: [248882]
  automated match to d3q0za_
  protein/RNA complex; complexed with 23e, 26f, so4
Domain(s) for 3qgf:
1. Domain d3qgfa_: 3qgf A: [184373]
  automated match to d1nb4a_
  protein/RNA complex; complexed with 23e, 46f, so4
2. Domain d3qgfb_: 3qgf B: [184374]
  automated match to d1nb4a_
  protein/RNA complex; complexed with 23e, 46f, so4
Domain(s) for 3ska:
- Domain d3skab_: 3ska B: [216430]
  Other proteins in same PDB: d3skaa_
  automated match to d3lkha_
  protein/RNA complex; complexed with 053, po4
Domain(s) for 3skh:
1. Domain d3skha_: 3skh A: [216431]
  automated match to d3lkha_
  protein/RNA complex; complexed with 058
2. Domain d3skhb_: 3skh B: [216432]
  automated match to d3lkha_
  protein/RNA complex; complexed with 058
Domain(s) for 3tyq:
1. Domain d3tyqa_: 3tyq A: [186013]
  automated match to d1nb4a_
  protein/RNA complex; complexed with hi4, po4
2. Domain d3tyqb_: 3tyq B: [186014]
  automated match to d1nb4a_
  protein/RNA complex; complexed with hi4, po4
Domain(s) for 3tyv:
1. Domain d3tyva_: 3tyv A: [186015]
  automated match to d1nb4a_
  protein/RNA complex; complexed with hi3, po4
2. Domain d3tyvb_: 3tyv B: [186016]
  automated match to d1nb4a_
  protein/RNA complex; complexed with hi3, po4
Domain(s) for 3u4o:
1. Domain d3u4oa_: 3u4o A: [186076]
  automated match to d1nb4a_
  complexed with 08e, po4
2. Domain d3u4ob_: 3u4o B: [186077]
  automated match to d1nb4a_
  complexed with 08e, po4
Domain(s) for 3u4r:
1. Domain d3u4ra_: 3u4r A: [186078]
  automated match to d1nb4a_
  complexed with 08f
2. Domain d3u4rb_: 3u4r B: [186079]
  automated match to d1nb4a_
  complexed with 08f
Domain(s) for 4dru:
1. Domain d4drua_: 4dru A: [195587]
  automated match to d1nb4a_
  complexed with 0ln, gol, so4
2. Domain d4drub_: 4dru B: [195588]
  automated match to d1nb4a_
  complexed with 0ln, gol, so4
Domain(s) for 4eaw:
1. Domain d4eawa_: 4eaw A: [196703]
  automated match to d1nb4a_
  complexed with 0nq, edo, peg, so4
2. Domain d4eawb_: 4eaw B: [201821]
  automated match to d4eawa_
  complexed with 0nq, edo, peg, so4
Domain(s) for 4gmc:
1. Domain d4gmca_: 4gmc A: [221997]
  automated match to d3mwva_
  complexed with 1bi, so4
2. Domain d4gmcb_: 4gmc B: [221998]
  automated match to d3mwva_
  complexed with 1bi, so4
Domain(s) for 4ih5:
1. Domain d4ih5a1: 4ih5 A:2-562 [223170]
  Other proteins in same PDB: d4ih5a2, d4ih5b2
  automated match to d3mf5a_
  complexed with 12r
2. Domain d4ih5b1: 4ih5 B:2-562 [223171]
  Other proteins in same PDB: d4ih5a2, d4ih5b2
  automated match to d3mf5a_
  complexed with 12r
Domain(s) for 4ih6:
1. Domain d4ih6a1: 4ih6 A:2-562 [223172]
  Other proteins in same PDB: d4ih6a2, d4ih6b2
  automated match to d3mf5a_
  complexed with 1ep
2. Domain d4ih6b1: 4ih6 B:2-562 [223173]
  Other proteins in same PDB: d4ih6a2, d4ih6b2
  automated match to d3mf5a_
  complexed with 1ep
Domain(s) for 4ih7:
1. Domain d4ih7a1: 4ih7 A:2-562 [223174]
  Other proteins in same PDB: d4ih7a2, d4ih7b2
  automated match to d3mf5a_
  complexed with 1er, zn
2. Domain d4ih7b1: 4ih7 B:2-562 [223175]
  Other proteins in same PDB: d4ih7a2, d4ih7b2
  automated match to d3mf5a_
  complexed with 1er, zn
Domain(s) for 4iz0:
- Domain d4iz0b_: 4iz0 B: [202683]
  automated match to d3mwva_
  complexed with 2bi
Domain(s) for 4j04:
1. Domain d4j04a_: 4j04 A: [223496]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1jf, mn
2. Domain d4j04b_: 4j04 B: [223497]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1jf, mn
Domain(s) for 4j06:
1. Domain d4j06a_: 4j06 A: [223498]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1jg
2. Domain d4j06b_: 4j06 B: [223499]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1jg
Domain(s) for 4j08:
1. Domain d4j08a_: 4j08 A: [223500]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1jh
2. Domain d4j08b_: 4j08 B: [223501]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1jh
Domain(s) for 4j0a:
1. Domain d4j0aa_: 4j0a A: [223502]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1jl
2. Domain d4j0ab_: 4j0a B: [223503]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1jl
Domain(s) for 4jjs:
1. Domain d4jjsa_: 4jjs A: [223845]
  automated match to d3mwva_
  complexed with 1m9, mg
2. Domain d4jjsb_: 4jjs B: [223846]
  automated match to d3mwva_
  complexed with 1m9, mg
Domain(s) for 4jju:
- Domain d4jjua_: 4jju A: [202748]
  automated match to d3mwva_
  complexed with 1mb, gol, mg
Domain(s) for 4jty:
1. Domain d4jtya_: 4jty A: [224025]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1nv, gol, mg
2. Domain d4jtyb_: 4jty B: [224026]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1nv, gol, mg
Domain(s) for 4jtz:
1. Domain d4jtza_: 4jtz A: [224027]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1nw, gol, mg
2. Domain d4jtzb_: 4jtz B: [224028]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1nw, gol, mg
Domain(s) for 4ju1:
1. Domain d4ju1a_: 4ju1 A: [224029]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1nz, gol, mg
2. Domain d4ju1b_: 4ju1 B: [224030]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1nz, gol, mg
Domain(s) for 4ju2:
1. Domain d4ju2a_: 4ju2 A: [224031]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o0, gol, mg
2. Domain d4ju2b_: 4ju2 B: [224032]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o0, gol, mg
Domain(s) for 4ju3:
1. Domain d4ju3a_: 4ju3 A: [229256]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o1, mg
2. Domain d4ju3b_: 4ju3 B: [229260]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o1, mg
Domain(s) for 4ju4:
1. Domain d4ju4a_: 4ju4 A: [229261]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o3, mg
2. Domain d4ju4b_: 4ju4 B: [229262]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o3, mg
Domain(s) for 4ju6:
1. Domain d4ju6a_: 4ju6 A: [229258]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o6, mg
2. Domain d4ju6b_: 4ju6 B: [229257]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o6, mg
Domain(s) for 4ju7:
1. Domain d4ju7a_: 4ju7 A: [229255]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o6, mg
2. Domain d4ju7b_: 4ju7 B: [229259]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1o6, mg
Domain(s) for 4jvq:
1. Domain d4jvqa_: 4jvq A: [236552]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1ml, gol, mg
2. Domain d4jvqb_: 4jvq B: [236553]
  automated match to d3mwva_
  protein/RNA complex; complexed with 1ml, gol, mg
Domain(s) for 4mk7:
1. Domain d4mk7a1: 4mk7 A:2-562 [228253]
  Other proteins in same PDB: d4mk7a2, d4mk7b2
  automated match to d3mf5a_
  complexed with 28o, dms, mg
2. Domain d4mk7b1: 4mk7 B:2-562 [228252]
  Other proteins in same PDB: d4mk7a2, d4mk7b2
  automated match to d3mf5a_
  complexed with 28o, dms, mg
Domain(s) for 4mk8:
1. Domain d4mk8a1: 4mk8 A:2-562 [228259]
  Other proteins in same PDB: d4mk8a2, d4mk8b2
  automated match to d3mf5a_
  complexed with 28q, dms, gol
2. Domain d4mk8b1: 4mk8 B:2-562 [228261]
  Other proteins in same PDB: d4mk8a2, d4mk8b2
  automated match to d3mf5a_
  complexed with 28q, dms, gol
Domain(s) for 4mk9:
1. Domain d4mk9a1: 4mk9 A:2-562 [228258]
  Other proteins in same PDB: d4mk9a2, d4mk9b2
  automated match to d3mf5a_
  complexed with 28r, gol
2. Domain d4mk9b1: 4mk9 B:2-562 [228260]
  Other proteins in same PDB: d4mk9a2, d4mk9b2
  automated match to d3mf5a_
  complexed with 28r, gol
Domain(s) for 4mka:
1. Domain d4mkaa1: 4mka A:2-562 [228256]
  Other proteins in same PDB: d4mkaa2, d4mkab2
  automated match to d3mf5a_
  complexed with 2ay, dms, gol
2. Domain d4mkab1: 4mka B:2-562 [228257]
  Other proteins in same PDB: d4mkaa2, d4mkab2
  automated match to d3mf5a_
  complexed with 2ay, dms, gol
Domain(s) for 4mkb:
1. Domain d4mkba1: 4mkb A:2-562 [228254]
  Other proteins in same PDB: d4mkba2, d4mkbb2
  automated match to d3mf5a_
  complexed with 28v
2. Domain d4mkbb1: 4mkb B:2-562 [228255]
  Other proteins in same PDB: d4mkba2, d4mkbb2
  automated match to d3mf5a_
  complexed with 28v

More info for Species Hepatitis C virus [TaxId:11103] from e.8.1.4 Viral RNA polymerase

Timeline for Species Hepatitis C virus [TaxId:11103] from e.8.1.4 Viral RNA polymerase:

Species Hepatitis C virus [TaxId:11103] from e.8.1.4 Viral RNA polymerase first appeared (with stable ids) in SCOP 1.55, called Species Hepatitis C virus [TaxId:11103] from e.8.1.4 RNA-dependent RNA-polymerase
Species Hepatitis C virus [TaxId:11103] from e.8.1.4 Viral RNA polymerase appears in SCOPe 2.05
Species Hepatitis C virus [TaxId:11103] from e.8.1.4 Viral RNA polymerase appears in SCOPe 2.07
Species Hepatitis C virus [TaxId:11103] from e.8.1.4 Viral RNA polymerase appears in the current release, SCOPe 2.08