SCOP 1.63: Protein: HIV-1 reverse transcriptase

Lineage for Protein: HIV-1 reverse transcriptase

Root: SCOP 1.63
Class e: Multi-domain proteins (alpha and beta) [56572] (39 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.2: Reverse transcriptase [56686] (2 proteins)
Protein HIV-1 reverse transcriptase [56689] (2 species)

Species:

Human immunodeficiency virus type 1 [TaxId:11676] [56690] (63 PDB entries)
1. Domains for 1bqm:
  1. Domain d1bqma2: 1bqm A:1-429 [43060]
    Other proteins in same PDB: d1bqma1
    complexed with hby; mutant
  2. Domain d1bqmb_: 1bqm B: [43061]
    Other proteins in same PDB: d1bqma1
    complexed with hby; mutant
2. Domains for 1bqn:
  1. Domain d1bqna2: 1bqn A:1-429 [43064]
    Other proteins in same PDB: d1bqna1
    complexed with hby; mutant
  2. Domain d1bqnb_: 1bqn B: [43065]
    Other proteins in same PDB: d1bqna1
    complexed with hby; mutant
3. Domains for 1c0t:
  1. Domain d1c0ta2: 1c0t A:4-429 [43082]
    Other proteins in same PDB: d1c0ta1
    complexed with bm1
  2. Domain d1c0tb_: 1c0t B: [43083]
    Other proteins in same PDB: d1c0ta1
    complexed with bm1
4. Domains for 1c0u:
  1. Domain d1c0ua2: 1c0u A:1-429 [43084]
    Other proteins in same PDB: d1c0ua1
    complexed with bm5
  2. Domain d1c0ub_: 1c0u B: [43085]
    Other proteins in same PDB: d1c0ua1
    complexed with bm5
5. Domains for 1c1b:
  1. Domain d1c1ba2: 1c1b A:1-429 [43076]
    Other proteins in same PDB: d1c1ba1
    complexed with gca
  2. Domain d1c1bb_: 1c1b B: [43077]
    Other proteins in same PDB: d1c1ba1
    complexed with gca
6. Domains for 1c1c:
  1. Domain d1c1ca2: 1c1c A:1-429 [43086]
    Other proteins in same PDB: d1c1ca1
    complexed with 612
  2. Domain d1c1cb_: 1c1c B: [43087]
    Other proteins in same PDB: d1c1ca1
    complexed with 612
7. Domains for 1dlo:
  1. Domain d1dloa2: 1dlo A:1-429 [43040]
    Other proteins in same PDB: d1dloa1
    mutant
  2. Domain d1dlob_: 1dlo B: [43041]
    Other proteins in same PDB: d1dloa1
    mutant
8. Domains for 1dtq:
  1. Domain d1dtqa2: 1dtq A:4-429 [43096]
    Other proteins in same PDB: d1dtqa1
    complexed with fpt
  2. Domain d1dtqb_: 1dtq B: [43097]
    Other proteins in same PDB: d1dtqa1
    complexed with fpt
9. Domains for 1dtt:
  1. Domain d1dtta2: 1dtt A:1-429 [43088]
    Other proteins in same PDB: d1dtta1
    complexed with ftc
  2. Domain d1dttb_: 1dtt B: [43089]
    Other proteins in same PDB: d1dtta1
    complexed with ftc
10. Domains for 1eet:
  1. Domain d1eeta2: 1eet A:1-429 [43078]
    Other proteins in same PDB: d1eeta1
    complexed with bfu; mutant
  2. Domain d1eetb_: 1eet B: [43079]
    Other proteins in same PDB: d1eeta1
    complexed with bfu; mutant
11. Domains for 1ep4:
  1. Domain d1ep4a2: 1ep4 A:4-429 [43092]
    Other proteins in same PDB: d1ep4a1
    complexed with s11
  2. Domain d1ep4b_: 1ep4 B: [43093]
    Other proteins in same PDB: d1ep4a1
    complexed with s11
12. Domains for 1fk9:
  1. Domain d1fk9a2: 1fk9 A:4-429 [43080]
    Other proteins in same PDB: d1fk9a1
    complexed with efz
  2. Domain d1fk9b_: 1fk9 B: [43081]
    Other proteins in same PDB: d1fk9a1
    complexed with efz
13. Domains for 1fko:
  1. Domain d1fkoa2: 1fko A:1-429 [43094]
    Other proteins in same PDB: d1fkoa1
    complexed with efz; mutant
  2. Domain d1fkob_: 1fko B: [43095]
    Other proteins in same PDB: d1fkoa1
    complexed with efz; mutant
14. Domains for 1fkp:
  1. Domain d1fkpa2: 1fkp A:1-429 [43098]
    Other proteins in same PDB: d1fkpa1
    complexed with nvp; mutant
  2. Domain d1fkpb_: 1fkp B: [43099]
    Other proteins in same PDB: d1fkpa1
    complexed with nvp; mutant
15. Domain for 1har:
  - Domain d1har__: 1har - [43025]
    fragment of "palm" and "fingers" domains
16. Domains for 1hmv:
  1. Domain d1hmva2: 1hmv A:1-429 [43046]
    Other proteins in same PDB: d1hmva1
    complexed with mg
  2. Domain d1hmvb_: 1hmv B: [43047]
    Other proteins in same PDB: d1hmva1
    complexed with mg
17. Domains for 1hni:
  1. Domain d1hnia2: 1hni A:1-429 [43044]
    Other proteins in same PDB: d1hnia1
    complexed with aaa; mutant
  2. Domain d1hnib_: 1hni B: [43045]
    Other proteins in same PDB: d1hnia1
    complexed with aaa; mutant
18. Domains for 1hnv:
  1. Domain d1hnva2: 1hnv A:1-429 [43056]
    Other proteins in same PDB: d1hnva1
    complexed with tbo; mutant
  2. Domain d1hnvb_: 1hnv B: [43057]
    Other proteins in same PDB: d1hnva1
    complexed with tbo; mutant
19. Domains for 1hpz:
  1. Domain d1hpza2: 1hpz A:1-429 [61120]
    Other proteins in same PDB: d1hpza1
    complexed with aap; mutant
  2. Domain d1hpzb_: 1hpz B: [61121]
    Other proteins in same PDB: d1hpza1
    complexed with aap; mutant
20. Domains for 1hqe:
  1. Domain d1hqea2: 1hqe A:1-429 [61131]
    Other proteins in same PDB: d1hqea1
    mutant
  2. Domain d1hqeb_: 1hqe B: [61132]
    Other proteins in same PDB: d1hqea1
    mutant
21. Domains for 1hqu:
  1. Domain d1hqua2: 1hqu A:1-429 [61158]
    Other proteins in same PDB: d1hqua1
    complexed with hby; mutant
  2. Domain d1hqub_: 1hqu B: [61159]
    Other proteins in same PDB: d1hqua1
    complexed with hby; mutant
22. Domains for 1hvu:
  1. Domain d1hvua2: 1hvu A:1-429 [43068]
    Other proteins in same PDB: d1hvua1, d1hvud1, d1hvug1, d1hvuj1
  2. Domain d1hvub_: 1hvu B: [43069]
    Other proteins in same PDB: d1hvua1, d1hvud1, d1hvug1, d1hvuj1
  3. Domain d1hvud2: 1hvu D:1-429 [43070]
    Other proteins in same PDB: d1hvua1, d1hvud1, d1hvug1, d1hvuj1
  4. Domain d1hvue_: 1hvu E: [43071]
    Other proteins in same PDB: d1hvua1, d1hvud1, d1hvug1, d1hvuj1
  5. Domain d1hvug2: 1hvu G:1-429 [43072]
    Other proteins in same PDB: d1hvua1, d1hvud1, d1hvug1, d1hvuj1
  6. Domain d1hvuh_: 1hvu H: [43073]
    Other proteins in same PDB: d1hvua1, d1hvud1, d1hvug1, d1hvuj1
  7. Domain d1hvuj2: 1hvu J:1-429 [43074]
    Other proteins in same PDB: d1hvua1, d1hvud1, d1hvug1, d1hvuj1
    protein/RNA complex
  8. Domain d1hvuk_: 1hvu K: [43075]
    Other proteins in same PDB: d1hvua1, d1hvud1, d1hvug1, d1hvuj1
    protein/RNA complex
23. Domains for 1hys:
  1. Domain d1hysa2: 1hys A:1-429 [61418]
    Other proteins in same PDB: d1hysa1, d1hysc1, d1hysc2, d1hysd1, d1hysd2
    mutant
  2. Domain d1hysb_: 1hys B: [61419]
    Other proteins in same PDB: d1hysa1, d1hysc1, d1hysc2, d1hysd1, d1hysd2
    mutant
24. Domains for 1ikv:
  1. Domain d1ikva2: 1ikv A:1-429 [62528]
    Other proteins in same PDB: d1ikva1
    complexed with efz; mutant
  2. Domain d1ikvb_: 1ikv B: [62529]
    Other proteins in same PDB: d1ikva1
    complexed with efz; mutant
25. Domains for 1ikw:
  1. Domain d1ikwa2: 1ikw A:1-429 [62531]
    Other proteins in same PDB: d1ikwa1
    complexed with efz; mutant
  2. Domain d1ikwb_: 1ikw B: [62532]
    Other proteins in same PDB: d1ikwa1
    complexed with efz; mutant
26. Domains for 1ikx:
  1. Domain d1ikxa2: 1ikx A:1-429 [62534]
    Other proteins in same PDB: d1ikxa1
    complexed with pnu; mutant
  2. Domain d1ikxb_: 1ikx B: [62535]
    Other proteins in same PDB: d1ikxa1
    complexed with pnu; mutant
27. Domains for 1iky:
  1. Domain d1ikya2: 1iky A:1-429 [62537]
    Other proteins in same PDB: d1ikya1
    complexed with msd; mutant
  2. Domain d1ikyb_: 1iky B: [62538]
    Other proteins in same PDB: d1ikya1
    complexed with msd; mutant
28. Domains for 1j5o:
  1. Domain d1j5oa2: 1j5o A:1-429 [71569]
    Other proteins in same PDB: d1j5oa1, d1j5oh1, d1j5oh2, d1j5ol1, d1j5ol2
    mutant
  2. Domain d1j5ob_: 1j5o B: [71570]
    Other proteins in same PDB: d1j5oa1, d1j5oh1, d1j5oh2, d1j5ol1, d1j5ol2
    mutant
29. Domains for 1jkh:
  1. Domain d1jkha2: 1jkh A:2-429 [66798]
    Other proteins in same PDB: d1jkha1
    complexed with efz; mutant
  2. Domain d1jkhb_: 1jkh B: [66799]
    Other proteins in same PDB: d1jkha1
    complexed with efz; mutant
30. Domains for 1jla:
  1. Domain d1jlaa2: 1jla A:1-429 [66834]
    Other proteins in same PDB: d1jlaa1
    complexed with tnk; mutant
  2. Domain d1jlab_: 1jla B: [66835]
    Other proteins in same PDB: d1jlaa1
    complexed with tnk; mutant
31. Domains for 1jlb:
  1. Domain d1jlba2: 1jlb A:1-429 [66837]
    Other proteins in same PDB: d1jlba1
    complexed with nvp; mutant
  2. Domain d1jlbb_: 1jlb B: [66838]
    Other proteins in same PDB: d1jlba1
    complexed with nvp; mutant
32. Domains for 1jlc:
  1. Domain d1jlca2: 1jlc A:1-429 [66840]
    Other proteins in same PDB: d1jlca1
    complexed with ftc; mutant
  2. Domain d1jlcb_: 1jlc B: [66841]
    Other proteins in same PDB: d1jlca1
    complexed with ftc; mutant
33. Domains for 1jle:
  1. Domain d1jlea2: 1jle A:1-429 [66843]
    Other proteins in same PDB: d1jlea1
    mutant
  2. Domain d1jleb_: 1jle B: [66844]
    Other proteins in same PDB: d1jlea1
    mutant
34. Domains for 1jlf:
  1. Domain d1jlfa2: 1jlf A:1-429 [66846]
    Other proteins in same PDB: d1jlfa1
    complexed with nvp; mutant
  2. Domain d1jlfb_: 1jlf B: [66847]
    Other proteins in same PDB: d1jlfa1
    complexed with nvp; mutant
35. Domains for 1jlg:
  1. Domain d1jlga2: 1jlg A:2-429 [66849]
    Other proteins in same PDB: d1jlga1
    complexed with uc1; mutant
  2. Domain d1jlgb_: 1jlg B: [66850]
    Other proteins in same PDB: d1jlga1
    complexed with uc1; mutant
36. Domains for 1jlq:
  1. Domain d1jlqa2: 1jlq A:1-429 [63174]
    Other proteins in same PDB: d1jlqa1
    complexed with sbn
  2. Domain d1jlqb_: 1jlq B: [63175]
    Other proteins in same PDB: d1jlqa1
    complexed with sbn
37. Domains for 1klm:
  1. Domain d1klma2: 1klm A:2-429 [43038]
    Other proteins in same PDB: d1klma1
    complexed with spp
  2. Domain d1klmb_: 1klm B: [43039]
    Other proteins in same PDB: d1klma1
    complexed with spp
38. Domains for 1lw0:
  1. Domain d1lw0a2: 1lw0 A:4-429 [78249]
    Other proteins in same PDB: d1lw0a1
    complexed with csd, nvp, po4; mutant
  2. Domain d1lw0b_: 1lw0 B: [78250]
    Other proteins in same PDB: d1lw0a1
    complexed with csd, nvp, po4; mutant
39. Domains for 1lw2:
  1. Domain d1lw2a2: 1lw2 A:1-429 [78252]
    Other proteins in same PDB: d1lw2a1
    complexed with csd, po4, u05; mutant
  2. Domain d1lw2b_: 1lw2 B: [78253]
    Other proteins in same PDB: d1lw2a1
    complexed with csd, po4, u05; mutant
40. Domains for 1lwc:
  1. Domain d1lwca2: 1lwc A:4-429 [78263]
    Other proteins in same PDB: d1lwca1
    complexed with csd, nvp, po4; mutant
  2. Domain d1lwcb_: 1lwc B: [78264]
    Other proteins in same PDB: d1lwca1
    complexed with csd, nvp, po4; mutant
41. Domains for 1lwe:
  1. Domain d1lwea2: 1lwe A:1-429 [78268]
    Other proteins in same PDB: d1lwea1
    complexed with csd, nvp, po4; mutant
  2. Domain d1lweb_: 1lwe B: [78269]
    Other proteins in same PDB: d1lwea1
    complexed with csd, nvp, po4; mutant
42. Domains for 1lwf:
  1. Domain d1lwfa2: 1lwf A:1-429 [78271]
    Other proteins in same PDB: d1lwfa1
    complexed with csd, nvp; mutant
  2. Domain d1lwfb_: 1lwf B: [78272]
    Other proteins in same PDB: d1lwfa1
    complexed with csd, nvp; mutant
43. Domains for 1n5y:
  1. Domain d1n5ya2: 1n5y A:1-429 [80058]
    Other proteins in same PDB: d1n5ya1, d1n5yh1, d1n5yh2, d1n5yl1, d1n5yl2
    complexed with atm, mg, mrg; mutant
  2. Domain d1n5yb_: 1n5y B: [80059]
    Other proteins in same PDB: d1n5ya1, d1n5yh1, d1n5yh2, d1n5yl1, d1n5yl2
    complexed with atm, mg, mrg; mutant
44. Domains for 1n6q:
  1. Domain d1n6qa2: 1n6q A:1-429 [80205]
    Other proteins in same PDB: d1n6qa1, d1n6qh1, d1n6qh2, d1n6ql1, d1n6ql2
    complexed with atm, mg, mrg; mutant
  2. Domain d1n6qb_: 1n6q B: [80206]
    Other proteins in same PDB: d1n6qa1, d1n6qh1, d1n6qh2, d1n6ql1, d1n6ql2
    complexed with atm, mg, mrg; mutant
45. Domains for 1qe1:
  1. Domain d1qe1a2: 1qe1 A:1-429 [43054]
    Other proteins in same PDB: d1qe1a1
    mutant
  2. Domain d1qe1b_: 1qe1 B: [43055]
    Other proteins in same PDB: d1qe1a1
    mutant
46. Domains for 1rev:
  1. Domain d1reva2: 1rev A:4-429 [43036]
    Other proteins in same PDB: d1reva1
    complexed with mg, trb
  2. Domain d1revb_: 1rev B: [43037]
    Other proteins in same PDB: d1reva1
    complexed with mg, trb
47. Domains for 1rt1:
  1. Domain d1rt1a2: 1rt1 A:1-429 [43030]
    Other proteins in same PDB: d1rt1a1
  2. Domain d1rt1b1: 1rt1 B:6-431 [43031]
    Other proteins in same PDB: d1rt1a1
    complexed with mkc
48. Domains for 1rt2:
  1. Domain d1rt2a2: 1rt2 A:1-429 [43032]
    Other proteins in same PDB: d1rt2a1
    complexed with tnk
  2. Domain d1rt2b_: 1rt2 B: [43033]
    Other proteins in same PDB: d1rt2a1
    complexed with tnk
49. Domains for 1rt3:
  1. Domain d1rt3a2: 1rt3 A:2-429 [43052]
    Other proteins in same PDB: d1rt3a1
    complexed with u05; mutant
  2. Domain d1rt3b_: 1rt3 B: [43053]
    Other proteins in same PDB: d1rt3a1
    complexed with u05; mutant
50. Domains for 1rt4:
  1. Domain d1rt4a2: 1rt4 A:1-429 [43100]
    Other proteins in same PDB: d1rt4a1
    complexed with po4, uc1
  2. Domain d1rt4b_: 1rt4 B: [43101]
    Other proteins in same PDB: d1rt4a1
    complexed with po4, uc1
51. Domains for 1rt5:
  1. Domain d1rt5a2: 1rt5 A:1-429 [43102]
    Other proteins in same PDB: d1rt5a1
    complexed with po4, uc2
  2. Domain d1rt5b_: 1rt5 B: [43103]
    Other proteins in same PDB: d1rt5a1
    complexed with po4, uc2
52. Domains for 1rt6:
  1. Domain d1rt6a2: 1rt6 A:1-429 [43090]
    Other proteins in same PDB: d1rt6a1
  2. Domain d1rt6b1: 1rt6 B:6-431 [43091]
    Other proteins in same PDB: d1rt6a1
    complexed with po4, uc3
53. Domains for 1rt7:
  1. Domain d1rt7a2: 1rt7 A:4-429 [43104]
    Other proteins in same PDB: d1rt7a1
  2. Domain d1rt7b1: 1rt7 B:6-431 [43105]
    Other proteins in same PDB: d1rt7a1
    complexed with po4, uc4
54. Domains for 1rtd:
  1. Domain d1rtda2: 1rtd A:1-429 [43048]
    Other proteins in same PDB: d1rtda1, d1rtdc1
  2. Domain d1rtdb_: 1rtd B: [43049]
    Other proteins in same PDB: d1rtda1, d1rtdc1
  3. Domain d1rtdc2: 1rtd C:1-429 [43050]
    Other proteins in same PDB: d1rtda1, d1rtdc1
    complexed with mg, ttp; mutant
  4. Domain d1rtdd_: 1rtd D: [43051]
    Other proteins in same PDB: d1rtda1, d1rtdc1
    complexed with mg, ttp; mutant
55. Domains for 1rth:
  1. Domain d1rtha2: 1rth A:1-429 [43028]
    Other proteins in same PDB: d1rtha1
  2. Domain d1rthb1: 1rth B:3-431 [43029]
    Other proteins in same PDB: d1rtha1
    complexed with cya, u05
56. Domains for 1rti:
  1. Domain d1rtia2: 1rti A:1-429 [43042]
    Other proteins in same PDB: d1rtia1
  2. Domain d1rtib1: 1rti B:5-431 [43043]
    Other proteins in same PDB: d1rtia1
    complexed with cya, hef
57. Domains for 1rtj:
  1. Domain d1rtja2: 1rtj A:1-429 [43034]
    Other proteins in same PDB: d1rtja1
  2. Domain d1rtjb1: 1rtj B:2-431 [43035]
    Other proteins in same PDB: d1rtja1
    complexed with cya
58. Domains for 1tvr:
  1. Domain d1tvra2: 1tvr A:1-429 [43058]
    Other proteins in same PDB: d1tvra1
    complexed with tb9; mutant
  2. Domain d1tvrb_: 1tvr B: [43059]
    Other proteins in same PDB: d1tvra1
    complexed with tb9; mutant
59. Domains for 1uwb:
  1. Domain d1uwba2: 1uwb A:1-429 [43062]
    Other proteins in same PDB: d1uwba1
    complexed with tbo; mutant
  2. Domain d1uwbb_: 1uwb B: [43063]
    Other proteins in same PDB: d1uwba1
    complexed with tbo; mutant
60. Domains for 1vrt:
  1. Domain d1vrta2: 1vrt A:4-429 [43023]
    Other proteins in same PDB: d1vrta1
    complexed with cya, mg, nev
  2. Domain d1vrtb_: 1vrt B: [43024]
    Other proteins in same PDB: d1vrta1
    complexed with cya, mg, nev
61. Domains for 1vru:
  1. Domain d1vrua2: 1vru A:3-429 [43026]
    Other proteins in same PDB: d1vrua1
    complexed with aap, cya
  2. Domain d1vrub_: 1vru B: [43027]
    Other proteins in same PDB: d1vrua1
    complexed with aap, cya
62. Domains for 2hmi:
  1. Domain d2hmia2: 2hmi A:1-429 [43106]
    Other proteins in same PDB: d2hmia1, d2hmic1, d2hmic2, d2hmid1, d2hmid2
    protein/protein/DNA complex; mutant
    less ordered regions are modeled as poly-ALA
  2. Domain d2hmib_: 2hmi B: [43107]
    Other proteins in same PDB: d2hmia1, d2hmic1, d2hmic2, d2hmid1, d2hmid2
    protein/protein/DNA complex; mutant
63. Domains for 3hvt:
  1. Domain d3hvta2: 3hvt A:2-429 [43066]
    Other proteins in same PDB: d3hvta1
    complexed with nev
  2. Domain d3hvtb_: 3hvt B: [43067]
    Other proteins in same PDB: d3hvta1
    complexed with nev
Human immunodeficiency virus type 2 [TaxId:11709] [82840] (1 PDB entry)
- Domains for 1mu2:
  1. Domain d1mu2a2: 1mu2 A:3-429 [79470]
    Other proteins in same PDB: d1mu2a1
    complexed with gol, so4; mutant
  2. Domain d1mu2b_: 1mu2 B: [79471]
    Other proteins in same PDB: d1mu2a1
    complexed with gol, so4; mutant

More info for Protein HIV-1 reverse transcriptase from e.8.1.2: Reverse transcriptase

Timeline for Protein HIV-1 reverse transcriptase from e.8.1.2: Reverse transcriptase:

Protein HIV-1 reverse transcriptase from e.8.1.2: Reverse transcriptase first appeared (with stable ids) in SCOP 1.55
Protein HIV-1 reverse transcriptase from e.8.1.2: Reverse transcriptase appears in SCOP 1.61
Protein HIV-1 reverse transcriptase from e.8.1.2: Reverse transcriptase appears in SCOP 1.65
Protein HIV-1 reverse transcriptase from e.8.1.2: Reverse transcriptase appears in the current release, SCOPe 2.08