SCOPe 2.03: Species: Bacteriophage RB69 [TaxId: 12353]

Lineage for Species: Bacteriophage RB69 [TaxId: 12353]

Root: SCOPe 2.03
Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
Protein Family B DNA polymerase [56680] (7 species)
Species Bacteriophage RB69 [TaxId:12353] [56681] (49 PDB entries)

PDB entries in Species: Bacteriophage RB69 [TaxId: 12353]:

Domain(s) for 1clq:
- Domain d1clqa2: 1clq A:376-903 [43006]
  Other proteins in same PDB: d1clqa1
  protein/DNA complex; complexed with ca, gdp
Domain(s) for 1ig9:
- Domain d1ig9a2: 1ig9 A:376-901 [62368]
  Other proteins in same PDB: d1ig9a1
  protein/DNA complex; complexed with ca, ttp
Domain(s) for 1ih7:
- Domain d1ih7a2: 1ih7 A:376-903 [62376]
  Other proteins in same PDB: d1ih7a1
  complexed with gmp, k
Domain(s) for 1q9x:
1. Domain d1q9xa2: 1q9x A:376-903 [96329]
  Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
  protein/DNA complex; complexed with 3dr, ca, dgp, doc
2. Domain d1q9xb2: 1q9x B:376-903 [96331]
  Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
  protein/DNA complex; complexed with 3dr, ca, dgp, doc
3. Domain d1q9xc2: 1q9x C:376-903 [96333]
  Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
  protein/DNA complex; complexed with 3dr, ca, dgp, doc
4. Domain d1q9xd2: 1q9x D:376-903 [96335]
  Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
  protein/DNA complex; complexed with 3dr, ca, dgp, doc
Domain(s) for 1q9y:
- Domain d1q9ya2: 1q9y A:376-902 [96337]
  Other proteins in same PDB: d1q9ya1
  protein/DNA complex; complexed with ca, dcp
Domain(s) for 1waf:
1. Domain d1wafa2: 1waf A:376-903 [43008]
  Other proteins in same PDB: d1wafa1, d1wafb1
  complexed with gmp
2. Domain d1wafb2: 1waf B:376-903 [43009]
  Other proteins in same PDB: d1wafa1, d1wafb1
  complexed with gmp
Domain(s) for 1waj:
- Domain d1waja2: 1waj A:376-903 [43007]
  Other proteins in same PDB: d1waja1
  complexed with 5gp
Domain(s) for 2atq:
- Domain d2atqa2: 2atq A:376-903 [127304]
  Other proteins in same PDB: d2atqa1, d2atqb1
  automatically matched to d1clqa2
  protein/DNA complex; complexed with gdp, zn
Domain(s) for 2dtu:
1. Domain d2dtua2: 2dtu A:376-903 [230660]
  Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
  automated match to d1ih7a2
  protein/DNA complex
2. Domain d2dtub2: 2dtu B:376-903 [230665]
  Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
  automated match to d1ih7a2
  protein/DNA complex
3. Domain d2dtuc2: 2dtu C:376-899 [230668]
  Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
  automated match to d1ih7a2
  protein/DNA complex
4. Domain d2dtud2: 2dtu D:376-898 [230666]
  Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
  automated match to d1ih7a2
  protein/DNA complex
Domain(s) for 2dy4:
1. Domain d2dy4a2: 2dy4 A:376-902 [131883]
  Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
  automated match to d1q9xa2
  protein/DNA complex
2. Domain d2dy4b2: 2dy4 B:376-902 [131885]
  Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
  automated match to d1q9xa2
  protein/DNA complex
3. Domain d2dy4c2: 2dy4 C:376-900 [131887]
  Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
  automated match to d1ig9a2
  protein/DNA complex
4. Domain d2dy4d2: 2dy4 D:376-897 [131889]
  Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
  automated match to d1ig9a2
  protein/DNA complex
Domain(s) for 2oyq:
1. Domain d2oyqa2: 2oyq A:376-903 [149071]
  Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
  automatically matched to d1clqa2
  protein/DNA complex; complexed with mg, n5p
2. Domain d2oyqb2: 2oyq B:376-899 [149073]
  Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
  automatically matched to d1clqa2
  protein/DNA complex; complexed with mg, n5p
3. Domain d2oyqc2: 2oyq C:376-900 [149075]
  Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
  automated match to d1ig9a2
  protein/DNA complex; complexed with mg, n5p
4. Domain d2oyqd2: 2oyq D:376-898 [149077]
  Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
  automated match to d1ig9a2
  protein/DNA complex; complexed with mg, n5p
Domain(s) for 2ozm:
- Domain d2ozma2: 2ozm A:376-903 [149116]
  Other proteins in same PDB: d2ozma1
  automated match to d1q9xa2
  protein/DNA complex; complexed with mg, n5p
Domain(s) for 2ozs:
- Domain d2ozsa2: 2ozs A:376-903 [149128]
  Other proteins in same PDB: d2ozsa1
  automated match to d1q9xa2
  protein/DNA complex; complexed with dtp, mg
Domain(s) for 2p5g:
1. Domain d2p5ga2: 2p5g A:376-903 [149241]
  Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
  automated match to d1q9xa2
  protein/DNA complex
2. Domain d2p5gb2: 2p5g B:376-899 [149243]
  Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
  automatically matched to d1clqa2
  protein/DNA complex
3. Domain d2p5gc2: 2p5g C:376-898 [149245]
  Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
  automated match to d1ig9a2
  protein/DNA complex
4. Domain d2p5gd2: 2p5g D:376-899 [149247]
  Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
  automated match to d1ig9a2
  protein/DNA complex
Domain(s) for 2p5o:
1. Domain d2p5oa2: 2p5o A:376-902 [139499]
  Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
  automatically matched to d1clqa2
  protein/DNA complex
2. Domain d2p5ob2: 2p5o B:376-901 [139501]
  Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
  automatically matched to d1clqa2
  protein/DNA complex
3. Domain d2p5oc2: 2p5o C:376-898 [139503]
  Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
  automatically matched to d1clqa2
  protein/DNA complex
4. Domain d2p5od2: 2p5o D:376-896 [139505]
  Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
  automatically matched to d1clqa2
  protein/DNA complex
Domain(s) for 3cfo:
- Domain d3cfoa2: 3cfo A:376-906 [231887]
  Other proteins in same PDB: d3cfoa1
  automated match to d1ih7a2
  complexed with gmp, so4; mutant
Domain(s) for 3cq8:
- Domain d3cq8a2: 3cq8 A:376-902 [156928]
  Other proteins in same PDB: d3cq8a1
  automatically matched to d1clqa2
  protein/DNA complex; complexed with ca, gol, na, ttp; mutant
Domain(s) for 3l8b:
1. Domain d3l8ba2: 3l8b A:376-903 [232822]
  Other proteins in same PDB: d3l8ba1, d3l8bb1
  automated match to d1ih7a2
  protein/DNA complex; complexed with so4
2. Domain d3l8bb2: 3l8b B:376-903 [232823]
  Other proteins in same PDB: d3l8ba1, d3l8bb1
  automated match to d1ih7a2
  protein/DNA complex; complexed with so4
Domain(s) for 3lzi:
- Domain d3lzia2: 3lzi A:376-903 [232891]
  Other proteins in same PDB: d3lzia1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, dtp
Domain(s) for 3lzj:
- Domain d3lzja2: 3lzj A:376-903 [232890]
  Other proteins in same PDB: d3lzja1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, ctp
Domain(s) for 3nci:
- Domain d3ncia2: 3nci A:376-903 [213878]
  Other proteins in same PDB: d3ncia1
  automated match to d1q9xa2
  protein/DNA complex; complexed with ca, dcp
Domain(s) for 3ne6:
- Domain d3ne6a2: 3ne6 A:376-903 [233011]
  Other proteins in same PDB: d3ne6a1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, dcp
Domain(s) for 3qes:
- Domain d3qesa2: 3qes A:376-902 [233321]
  Other proteins in same PDB: d3qesa1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, dgt
Domain(s) for 3qet:
- Domain d3qeta2: 3qet A:376-903 [233323]
  Other proteins in same PDB: d3qeta1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, ttp
Domain(s) for 3scx:
- Domain d3scxa2: 3scx A:376-903 [233529]
  Other proteins in same PDB: d3scxa1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, dup; mutant
Domain(s) for 3spy:
- Domain d3spya2: 3spy A:376-901 [233590]
  Other proteins in same PDB: d3spya1
  automated match to d1ih7a2
  protein/DNA complex; complexed with mg, upc
Domain(s) for 3spz:
- Domain d3spza2: 3spz A:376-903 [233592]
  Other proteins in same PDB: d3spza1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, upc
Domain(s) for 3sq1:
- Domain d3sq1a2: 3sq1 A:376-901 [233594]
  Other proteins in same PDB: d3sq1a1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, dup
Domain(s) for 3sq2:
- Domain d3sq2a2: 3sq2 A:376-902 [233596]
  Other proteins in same PDB: d3sq2a1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, ttp
Domain(s) for 3sun:
- Domain d3suna2: 3sun A:376-895 [233639]
  Other proteins in same PDB: d3suna1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, ttp
Domain(s) for 3suo:
- Domain d3suoa2: 3suo A:376-900 [233641]
  Other proteins in same PDB: d3suoa1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, ttp
Domain(s) for 3uiq:
- Domain d3uiqa2: 3uiq A:376-901 [217393]
  Other proteins in same PDB: d3uiqa1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, dup
Domain(s) for 4dtj:
- Domain d4dtja2: 4dtj A:376-901 [220020]
  Other proteins in same PDB: d4dtja1
  automated match to d1ig9a2
  protein/DNA complex; complexed with ca, ttp
Domain(s) for 4dtm:
- Domain d4dtma2: 4dtm A:376-901 [220022]
  Other proteins in same PDB: d4dtma1
  automated match to d1ig9a2
  protein/DNA complex; complexed with ca, dcp
Domain(s) for 4du1:
- Domain d4du1a2: 4du1 A:376-901 [220028]
  Other proteins in same PDB: d4du1a1
  automated match to d1ig9a2
  protein/DNA complex; complexed with ca, dtp
Domain(s) for 4du3:
- Domain d4du3a2: 4du3 A:376-901 [220030]
  Other proteins in same PDB: d4du3a1
  automated match to d1ig9a2
  protein/DNA complex; complexed with ca, dtp
Domain(s) for 4du4:
- Domain d4du4a2: 4du4 A:376-902 [220032]
  Other proteins in same PDB: d4du4a1
  automated match to d1q9xa2
  protein/DNA complex; complexed with ca, dtp
Domain(s) for 4i9l:
- Domain d4i9la2: 4i9l A:376-903 [229485]
  Other proteins in same PDB: d4i9la1
  automated match to d1ih7a2
  complexed with cl, gmp, so4; mutant
Domain(s) for 4j2a:
- Domain d4j2aa2: 4j2a A:376-901 [237017]
  Other proteins in same PDB: d4j2aa1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, ttp
Domain(s) for 4j2b:
- Domain d4j2ba2: 4j2b A:376-901 [237015]
  Other proteins in same PDB: d4j2ba1
  automated match to d1ih7a2
  protein/DNA complex; complexed with atp, ca
Domain(s) for 4j2e:
- Domain d4j2ea2: 4j2e A:376-901 [237019]
  Other proteins in same PDB: d4j2ea1
  automated match to d1ih7a2
  protein/DNA complex; complexed with atp, ca
Domain(s) for 4khn:
1. Domain d4khna2: 4khn A:376-901 [235166]
  Other proteins in same PDB: d4khna1, d4khnb1
  automated match to d4khnb2
  protein/DNA complex; complexed with ca, gol, na, so4, xg4; mutant
2. Domain d4khnb2: 4khn B:376-901 [228219]
  Other proteins in same PDB: d4khna1, d4khnb1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, gol, na, so4, xg4; mutant
Domain(s) for 4khq:
- Domain d4khqa2: 4khq A:376-902 [228217]
  Other proteins in same PDB: d4khqa1
  automated match to d1ih7a2
  protein/DNA complex; complexed with ca, dup, na; mutant
Domain(s) for 4khs:
- Domain d4khsa2: 4khs A:376-902 [235170]
  Other proteins in same PDB: d4khsa1
  automated match to d4khqa2
  protein/DNA complex; complexed with ca, cl, na, ttp; mutant
Domain(s) for 4khu:
- Domain d4khua2: 4khu A:376-902 [235172]
  Other proteins in same PDB: d4khua1
  automated match to d4khqa2
  protein/DNA complex; complexed with ca, na, ttp; mutant
Domain(s) for 4khw:
- Domain d4khwa2: 4khw A:376-902 [235174]
  Other proteins in same PDB: d4khwa1
  automated match to d4khqa2
  protein/DNA complex; complexed with ca, na, ttp; mutant
Domain(s) for 4khy:
- Domain d4khya2: 4khy A:376-902 [235168]
  Other proteins in same PDB: d4khya1
  automated match to d4khqa2
  protein/DNA complex; complexed with ca, na, ttp; mutant
Domain(s) for 4ki4:
- Domain d4ki4a2: 4ki4 A:376-901 [235176]
  Other proteins in same PDB: d4ki4a1
  automated match to d4khqa2
  protein/DNA complex; complexed with ca, gol, na, ttp; mutant
Domain(s) for 4ki6:
- Domain d4ki6a2: 4ki6 A:376-902 [235178]
  Other proteins in same PDB: d4ki6a1
  automated match to d4khqa2
  protein/DNA complex; complexed with ca, na, po4, ttp; mutant

More info for Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 Family B DNA polymerase

Timeline for Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 Family B DNA polymerase:

Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 Family B DNA polymerase first appeared (with stable ids) in SCOP 1.55, called Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 T4-like DNA polymerase
Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 Family B DNA polymerase appears in SCOPe 2.02
Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 Family B DNA polymerase appears in SCOPe 2.04
Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 Family B DNA polymerase appears in the current release, SCOPe 2.08