Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds) |
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily) divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members |
Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain |
Family e.8.1.1: DNA polymerase I [56673] (4 proteins) |
Protein Family B DNA polymerase [56680] (7 species) |
Species Bacteriophage RB69 [TaxId:12353] [56681] (15 PDB entries) |
Domain d1clqa2: 1clq A:376-903 [43006] Other proteins in same PDB: d1clqa1 protein/DNA complex; complexed with ca, gdp |
Domain d1ig9a2: 1ig9 A:376-901 [62368] Other proteins in same PDB: d1ig9a1 protein/DNA complex; complexed with ca, ttp |
Domain d1ih7a2: 1ih7 A:376-903 [62376] Other proteins in same PDB: d1ih7a1 complexed with gmp, k |
Domain d1q9xa2: 1q9x A:376-903 [96329] Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1 protein/DNA complex; complexed with 3dr, ca, dgp, doc |
Domain d1q9xb2: 1q9x B:376-903 [96331] Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1 protein/DNA complex; complexed with 3dr, ca, dgp, doc |
Domain d1q9xc2: 1q9x C:376-903 [96333] Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1 protein/DNA complex; complexed with 3dr, ca, dgp, doc |
Domain d1q9xd2: 1q9x D:376-903 [96335] Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1 protein/DNA complex; complexed with 3dr, ca, dgp, doc |
Domain d1q9ya2: 1q9y A:376-902 [96337] Other proteins in same PDB: d1q9ya1 protein/DNA complex; complexed with ca, dcp |
Domain d1wafa2: 1waf A:376-903 [43008] Other proteins in same PDB: d1wafa1, d1wafb1 complexed with gmp |
Domain d1wafb2: 1waf B:376-903 [43009] Other proteins in same PDB: d1wafa1, d1wafb1 complexed with gmp |
Domain d1waja2: 1waj A:376-903 [43007] Other proteins in same PDB: d1waja1 complexed with 5gp |
Domain d2atqa2: 2atq A:376-903 [127304] Other proteins in same PDB: d2atqa1, d2atqb1 automatically matched to d1clqa2 protein/DNA complex; complexed with gdp, zn |
Domain d2dy4a2: 2dy4 A:376-902 [131883] Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2dy4b2: 2dy4 B:376-902 [131885] Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2dy4c2: 2dy4 C:376-900 [131887] Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2dy4d2: 2dy4 D:376-897 [131889] Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2oyqa2: 2oyq A:376-903 [149071] Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1 automatically matched to d1clqa2 protein/DNA complex; complexed with mg, n5p |
Domain d2oyqb2: 2oyq B:376-899 [149073] Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1 automatically matched to d1clqa2 protein/DNA complex; complexed with mg, n5p |
Domain d2oyqc2: 2oyq C:376-900 [149075] Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1 automatically matched to d1clqa2 protein/DNA complex; complexed with mg, n5p |
Domain d2oyqd2: 2oyq D:376-898 [149077] Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1 automatically matched to d1clqa2 protein/DNA complex; complexed with mg, n5p |
Domain d2ozma2: 2ozm A:376-903 [149116] Other proteins in same PDB: d2ozma1 automatically matched to d1clqa2 protein/DNA complex; complexed with mg, n5p |
Domain d2ozsa2: 2ozs A:376-903 [149128] Other proteins in same PDB: d2ozsa1 automatically matched to d1clqa2 protein/DNA complex; complexed with dtp, mg |
Domain d2p5ga2: 2p5g A:376-903 [149241] Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2p5gb2: 2p5g B:376-899 [149243] Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2p5gc2: 2p5g C:376-898 [149245] Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2p5gd2: 2p5g D:376-899 [149247] Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2p5oa2: 2p5o A:376-902 [139499] Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2p5ob2: 2p5o B:376-901 [139501] Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2p5oc2: 2p5o C:376-898 [139503] Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1 automatically matched to d1clqa2 protein/DNA complex |
Domain d2p5od2: 2p5o D:376-896 [139505] Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1 automatically matched to d1clqa2 protein/DNA complex |
Domain d3cq8a2: 3cq8 A:376-902 [156928] Other proteins in same PDB: d3cq8a1 automatically matched to d1clqa2 protein/DNA complex; complexed with ca, gol, na, ttp; mutant |
Timeline for Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 Family B DNA polymerase: