Lineage for Protein: Family B DNA polymerase

  1. Root: SCOP 1.73
  2. 742018Class e: Multi-domain proteins (alpha and beta) [56572] (53 folds)
  3. 743030Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 743031Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 743032Family e.8.1.1: DNA polymerase I [56673] (4 proteins)
  6. 743110Protein Family B DNA polymerase [56680] (7 species)

Species:

  1. 743111Archaeon Desulfurococcus tok [TaxId:108142] [56684] (2 PDB entries)
    1. Domain for 1d5a:
    2. Domain for 1qqc:
  2. 743114Archaeon Pyrococcus kodakaraensis [TaxId:311400] [56685] (2 PDB entries)
    1. Domain for 1wn7:
    2. Domain for 1wns:
  3. 743117Archaeon Thermococcus gorgonarius [TaxId:71997] [56682] (1 PDB entry)
  4. 743119Archaeon Thermococcus sp., 9on-7 [TaxId:35749] [56683] (1 PDB entry)
  5. 743121Bacteriophage RB69 [TaxId:12353] [56681] (10 PDB entries)
    1. Domain for 1clq:
    2. Domain for 1ig9:
    3. Domain for 1ih7:
    4. Domains for 1q9x:
      1. 743137Domain d1q9xa2: 1q9x A:376-903 [96329]
        Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      2. 743138Domain d1q9xb2: 1q9x B:376-903 [96331]
        Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      3. 743139Domain d1q9xc2: 1q9x C:376-903 [96333]
        Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      4. 743140Domain d1q9xd2: 1q9x D:376-903 [96335]
        Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
        complexed with 3dr, ca, dgp, doc; mutant
    5. Domain for 1q9y:
    6. Domains for 1waf:
      1. 743135Domain d1wafa2: 1waf A:376-903 [43008]
        Other proteins in same PDB: d1wafa1, d1wafb1
      2. 743136Domain d1wafb2: 1waf B:376-903 [43009]
        Other proteins in same PDB: d1wafa1, d1wafb1
        complexed with gmp
    7. Domain for 1waj:
    8. Domain for 2atq:
    9. Domains for 2dy4:
      1. 743124Domain d2dy4a2: 2dy4 A:376-902 [131883]
        Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
        automatically matched to d1clqa2
        complexed with ctg; mutant
      2. 743125Domain d2dy4b2: 2dy4 B:376-902 [131885]
        Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
        automatically matched to d1clqa2
        complexed with ctg; mutant
      3. 743126Domain d2dy4c2: 2dy4 C:376-900 [131887]
        Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
        automatically matched to d1clqa2
        complexed with ctg; mutant
      4. 743127Domain d2dy4d2: 2dy4 D:376-897 [131889]
        Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
        automatically matched to d1clqa2
        complexed with ctg; mutant
    10. Domains for 2p5o:
      1. 743131Domain d2p5oa2: 2p5o A:376-902 [139499]
        Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
        automatically matched to d1clqa2
        complexed with 3dr; mutant
      2. 743132Domain d2p5ob2: 2p5o B:376-901 [139501]
        Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
        automatically matched to d1clqa2
        complexed with 3dr; mutant
      3. 743133Domain d2p5oc2: 2p5o C:376-898 [139503]
        Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
        automatically matched to d1clqa2
        complexed with 3dr; mutant
      4. 743134Domain d2p5od2: 2p5o D:376-896 [139505]
        Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
        automatically matched to d1clqa2
        complexed with 3dr; mutant
  6. 743142Escherichia coli [TaxId:562] [103399] (1 PDB entry)
  7. 743144Sulfolobus solfataricus [TaxId:2287] [118192] (1 PDB entry)

More info for Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I

Timeline for Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I: