Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds) |
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily) divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members |
Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain |
Family e.8.1.1: DNA polymerase I [56673] (4 proteins) |
Protein DNA polymerase I (Klenow fragment) [56674] (3 species) |
Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (42 PDB entries) Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462 Uniprot Q45458 298-876 # 88% sequence identity |
Domain d1l3sa2: 1l3s A:469-876 [84522] Other proteins in same PDB: d1l3sa1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1l3ta2: 1l3t A:469-876 [84524] Other proteins in same PDB: d1l3ta1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1l3ua2: 1l3u A:469-876 [84526] Other proteins in same PDB: d1l3ua1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1l3va2: 1l3v A:469-876 [84528] Other proteins in same PDB: d1l3va1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1l5ua2: 1l5u A:469-876 [84530] Other proteins in same PDB: d1l5ua1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1lv5a2: 1lv5 A:469-876 [84720] Other proteins in same PDB: d1lv5a1, d1lv5b1 protein/DNA complex; complexed with dcp, mg, mn, so4 |
Domain d1lv5b2: 1lv5 B:469-876 [84722] Other proteins in same PDB: d1lv5a1, d1lv5b1 protein/DNA complex; complexed with dcp, mg, mn, so4 |
Domain d1njwa2: 1njw A:469-876 [91914] Other proteins in same PDB: d1njwa1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1njxa2: 1njx A:469-876 [91916] Other proteins in same PDB: d1njxa1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1njya2: 1njy A:469-876 [91918] Other proteins in same PDB: d1njya1 protein/DNA complex; complexed with mg, so4, suc, ttp |
Domain d1njza2: 1njz A:469-876 [91920] Other proteins in same PDB: d1njza1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1nk0a2: 1nk0 A:469-876 [91922] Other proteins in same PDB: d1nk0a1 protein/DNA complex; complexed with mes, so4, suc |
Domain d1nk4a2: 1nk4 A:469-876 [91924] Other proteins in same PDB: d1nk4a1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1nk5a2: 1nk5 A:469-876 [91926] Other proteins in same PDB: d1nk5a1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1nk6a2: 1nk6 A:469-876 [91928] Other proteins in same PDB: d1nk6a1 protein/DNA complex; complexed with so4, suc |
Domain d1nk7a2: 1nk7 A:469-876 [91930] Other proteins in same PDB: d1nk7a1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1nk8a2: 1nk8 A:469-876 [91932] Other proteins in same PDB: d1nk8a1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1nk9a2: 1nk9 A:469-876 [91934] Other proteins in same PDB: d1nk9a1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1nkba2: 1nkb A:469-876 [91936] Other proteins in same PDB: d1nkba1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1nkca2: 1nkc A:469-876 [91938] Other proteins in same PDB: d1nkca1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1nkea2: 1nke A:469-876 [91940] Other proteins in same PDB: d1nkea1 protein/DNA complex; complexed with dcp, mg, so4, suc |
Domain d1u45a2: 1u45 A:469-876 [107655] Other proteins in same PDB: d1u45a1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1u47a2: 1u47 A:469-876 [107659] Other proteins in same PDB: d1u47a1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1u48a2: 1u48 A:469-876 [107661] Other proteins in same PDB: d1u48a1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1u49a2: 1u49 A:469-876 [107663] Other proteins in same PDB: d1u49a1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1u4ba2: 1u4b A:469-876 [107665] Other proteins in same PDB: d1u4ba1 protein/DNA complex; complexed with mg, so4, suc |
Domain d1ua0a2: 1ua0 A:469-876 [107754] Other proteins in same PDB: d1ua0a1 protein/DNA complex; complexed with af, so4, suc |
Domain d1ua1a2: 1ua1 A:469-876 [107756] Other proteins in same PDB: d1ua1a1 protein/DNA complex; complexed with af, so4 |
Domain d1xc9a2: 1xc9 A:469-876 [115112] Other proteins in same PDB: d1xc9a1 protein/DNA complex; complexed with bap, mg, so4, suc |
Domain d1xwla2: 1xwl A:469-876 [43001] Other proteins in same PDB: d1xwla1 complexed with so4 |
Domain d2bdpa2: 2bdp A:469-876 [43002] Other proteins in same PDB: d2bdpa1 protein/DNA complex; complexed with mg, so4 |
Domain d2hhqa2: 2hhq A:469-876 [136507] Other proteins in same PDB: d2hhqa1 automatically matched to d1l3sa2 protein/DNA complex; complexed with mg, so4, suc |
Domain d2hhsa2: 2hhs A:469-876 [136509] Other proteins in same PDB: d2hhsa1 automatically matched to d1l3sa2 protein/DNA complex; complexed with mg, so4, suc |
Domain d2hhta2: 2hht A:469-876 [136511] Other proteins in same PDB: d2hhta1 automatically matched to d1l3sa2 protein/DNA complex; complexed with mg, so4, suc |
Domain d2hhua2: 2hhu A:469-876 [136513] Other proteins in same PDB: d2hhua1 automatically matched to d1l3sa2 protein/DNA complex; complexed with dcp, mg, so4, suc |
Domain d2hhva2: 2hhv A:469-876 [136515] Other proteins in same PDB: d2hhva1 automatically matched to d1l3sa2 protein/DNA complex; complexed with mg, so4, suc |
Domain d2hhwa2: 2hhw A:469-876 [136517] Other proteins in same PDB: d2hhwa1, d2hhwd1 automatically matched to d1l3sa2 protein/DNA complex; complexed with 23t, mn, so4, suc |
Domain d2hhwd2: 2hhw D:469-876 [136519] Other proteins in same PDB: d2hhwa1, d2hhwd1 automatically matched to d1l3sa2 protein/DNA complex; complexed with 23t, mn, so4, suc |
Domain d2hhxa2: 2hhx A:469-876 [136521] Other proteins in same PDB: d2hhxa1 automatically matched to d1l3sa2 protein/DNA complex; complexed with so4, suc |
Domain d2hvha2: 2hvh A:469-876 [136805] Other proteins in same PDB: d2hvha1, d2hvhd1 automatically matched to d1l3sa2 protein/DNA complex; complexed with dct, mn, so4, suc |
Domain d2hvhd2: 2hvh D:469-876 [136807] Other proteins in same PDB: d2hvha1, d2hvhd1 automatically matched to d1l3sa2 protein/DNA complex; complexed with dct, mn, so4, suc |
Domain d2hvia2: 2hvi A:469-876 [136809] Other proteins in same PDB: d2hvia1, d2hvid1 automatically matched to d1l3sa2 protein/DNA complex; complexed with dct, mg, so4, suc |
Domain d2hvid2: 2hvi D:469-876 [136811] Other proteins in same PDB: d2hvia1, d2hvid1 automatically matched to d1l3sa2 protein/DNA complex; complexed with dct, mg, so4, suc |
Domain d2hw3a2: 2hw3 A:469-876 [136820] Other proteins in same PDB: d2hw3a1 automatically matched to d1l3sa2 protein/DNA complex; complexed with mg, so4, suc |
Domain d3bdpa2: 3bdp A:469-876 [43004] Other proteins in same PDB: d3bdpa1 protein/DNA complex; complexed with so4 |
Domain d4bdpa2: 4bdp A:469-876 [43003] Other proteins in same PDB: d4bdpa1 protein/DNA complex; complexed with mg, so4 |
Timeline for Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] from e.8.1.1 DNA polymerase I (Klenow fragment):