Lineage for Protein: DNA polymerase I (Klenow fragment)

  1. Root: SCOP 1.75
  2. 883176Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 884269Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 884270Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 884271Family e.8.1.1: DNA polymerase I [56673] (4 proteins)
  6. 884272Protein DNA polymerase I (Klenow fragment) [56674] (3 species)

Species:

  1. 884273Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (42 PDB entries)
    Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
    Uniprot Q45458 298-876 # 88% sequence identity
    1. Domain for 1l3s:
    2. Domain for 1l3t:
    3. Domain for 1l3u:
    4. Domain for 1l3v:
    5. Domain for 1l5u:
    6. Domains for 1lv5:
      1. 884315Domain d1lv5a2: 1lv5 A:469-876 [84720]
        Other proteins in same PDB: d1lv5a1, d1lv5b1
      2. 884316Domain d1lv5b2: 1lv5 B:469-876 [84722]
        Other proteins in same PDB: d1lv5a1, d1lv5b1
        complexed with dcp, mg, mn, so4; mutant
    7. Domain for 1njw:
    8. Domain for 1njx:
    9. Domain for 1njy:
    10. Domain for 1njz:
    11. Domain for 1nk0:
    12. Domain for 1nk4:
    13. Domain for 1nk5:
    14. Domain for 1nk6:
    15. Domain for 1nk7:
    16. Domain for 1nk8:
    17. Domain for 1nk9:
    18. Domain for 1nkb:
    19. Domain for 1nkc:
    20. Domain for 1nke:
    21. Domain for 1u45:
    22. Domain for 1u47:
    23. Domain for 1u48:
    24. Domain for 1u49:
    25. Domain for 1u4b:
    26. Domain for 1ua0:
    27. Domain for 1ua1:
    28. Domain for 1xc9:
    29. Domain for 1xwl:
    30. Domain for 2bdp:
    31. Domain for 2hhq:
    32. Domain for 2hhs:
    33. Domain for 2hht:
    34. Domain for 2hhu:
    35. Domain for 2hhv:
    36. Domains for 2hhw:
      1. 884288Domain d2hhwa2: 2hhw A:469-876 [136517]
        Other proteins in same PDB: d2hhwa1, d2hhwd1
        automatically matched to d1l3sa2
        complexed with 23t, 6og, ddg, mn, so4, suc; mutant
      2. 884289Domain d2hhwd2: 2hhw D:469-876 [136519]
        Other proteins in same PDB: d2hhwa1, d2hhwd1
        automatically matched to d1l3sa2
        complexed with 23t, 6og, ddg, mn, so4, suc; mutant
    37. Domain for 2hhx:
    38. Domains for 2hvh:
      1. 884317Domain d2hvha2: 2hvh A:469-876 [136805]
        Other proteins in same PDB: d2hvha1, d2hvhd1
        automatically matched to d1l3sa2
        complexed with 6og, dct, ddg, mn, so4, suc
      2. 884318Domain d2hvhd2: 2hvh D:469-876 [136807]
        Other proteins in same PDB: d2hvha1, d2hvhd1
        automatically matched to d1l3sa2
        complexed with 6og, dct, ddg, mn, so4, suc
    39. Domains for 2hvi:
      1. 884297Domain d2hvia2: 2hvi A:469-876 [136809]
        Other proteins in same PDB: d2hvia1, d2hvid1
        automatically matched to d1l3sa2
        complexed with dct, ddg, mg, so4, suc
      2. 884298Domain d2hvid2: 2hvi D:469-876 [136811]
        Other proteins in same PDB: d2hvia1, d2hvid1
        automatically matched to d1l3sa2
        complexed with dct, ddg, mg, so4, suc
    40. Domain for 2hw3:
    41. Domain for 3bdp:
    42. Domain for 4bdp:
  2. 884320Escherichia coli [TaxId:562] [56675] (14 PDB entries)
    1. Domain for 1d8y:
    2. Domain for 1d9d:
    3. Domain for 1d9f:
    4. Domain for 1dpi:
    5. Domain for 1kfd:
    6. Domain for 1kfs:
    7. Domain for 1kln:
    8. Domain for 1krp:
    9. Domain for 1ksp:
    10. Domain for 1qsl:
    11. Domain for 2kfn:
    12. Domain for 2kfz:
    13. Domain for 2kzm:
    14. Domain for 2kzz:
  3. 884335Thermus aquaticus [TaxId:271] [56676] (13 PDB entries)
    1. Domain for 1bgx:
    2. Domain for 1cmw:
    3. Domain for 1jxe:
    4. Domain for 1ktq:
    5. Domain for 1qss:
    6. Domain for 1qsy:
    7. Domain for 1qtm:
    8. Domain for 1taq:
    9. Domain for 1tau:
    10. Domain for 2ktq:
    11. Domain for 3ktq:
    12. Domain for 4ktq:
    13. Domain for 5ktq:

More info for Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I

Timeline for Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I: