SCOP 1.73: Protein: DNA polymerase I (Klenow fragment)

Lineage for Protein: DNA polymerase I (Klenow fragment)

Root: SCOP 1.73
Class e: Multi-domain proteins (alpha and beta) [56572] (53 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.1: DNA polymerase I [56673] (4 proteins)
Protein DNA polymerase I (Klenow fragment) [56674] (3 species)

Species:

Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (42 PDB entries)
1. Domain for 1l3s:
  - Domain d1l3sa2: 1l3s A:469-876 [84522]
    Other proteins in same PDB: d1l3sa1
    complexed with mg, so4, suc
2. Domain for 1l3t:
  - Domain d1l3ta2: 1l3t A:469-876 [84524]
    Other proteins in same PDB: d1l3ta1
    complexed with mg, so4, suc
3. Domain for 1l3u:
  - Domain d1l3ua2: 1l3u A:469-876 [84526]
    Other proteins in same PDB: d1l3ua1
    complexed with mg, so4, suc
4. Domain for 1l3v:
  - Domain d1l3va2: 1l3v A:469-876 [84528]
    Other proteins in same PDB: d1l3va1
    complexed with mg, so4, suc
5. Domain for 1l5u:
  - Domain d1l5ua2: 1l5u A:469-876 [84530]
    Other proteins in same PDB: d1l5ua1
    complexed with mg, so4, suc
6. Domains for 1lv5:
  1. Domain d1lv5a2: 1lv5 A:469-876 [84720]
    Other proteins in same PDB: d1lv5a1, d1lv5b1
  2. Domain d1lv5b2: 1lv5 B:469-876 [84722]
    Other proteins in same PDB: d1lv5a1, d1lv5b1
    complexed with dcp, mg, mn, so4; mutant
7. Domain for 1njw:
  - Domain d1njwa2: 1njw A:469-876 [91914]
    Other proteins in same PDB: d1njwa1
    complexed with mg, so4, suc
8. Domain for 1njx:
  - Domain d1njxa2: 1njx A:469-876 [91916]
    Other proteins in same PDB: d1njxa1
    complexed with mg, so4, suc
9. Domain for 1njy:
  - Domain d1njya2: 1njy A:469-876 [91918]
    Other proteins in same PDB: d1njya1
    complexed with mg, so4, suc, ttp
10. Domain for 1njz:
  - Domain d1njza2: 1njz A:469-876 [91920]
    Other proteins in same PDB: d1njza1
    complexed with mg, so4, suc
11. Domain for 1nk0:
  - Domain d1nk0a2: 1nk0 A:469-876 [91922]
    Other proteins in same PDB: d1nk0a1
    complexed with mes, so4, suc
12. Domain for 1nk4:
  - Domain d1nk4a2: 1nk4 A:469-876 [91924]
    Other proteins in same PDB: d1nk4a1
    complexed with mg, so4, suc
13. Domain for 1nk5:
  - Domain d1nk5a2: 1nk5 A:469-876 [91926]
    Other proteins in same PDB: d1nk5a1
    complexed with mg, so4, suc
14. Domain for 1nk6:
  - Domain d1nk6a2: 1nk6 A:469-876 [91928]
    Other proteins in same PDB: d1nk6a1
    complexed with so4, suc
15. Domain for 1nk7:
  - Domain d1nk7a2: 1nk7 A:469-876 [91930]
    Other proteins in same PDB: d1nk7a1
    complexed with mg, so4, suc
16. Domain for 1nk8:
  - Domain d1nk8a2: 1nk8 A:469-876 [91932]
    Other proteins in same PDB: d1nk8a1
    complexed with mg, so4, suc
17. Domain for 1nk9:
  - Domain d1nk9a2: 1nk9 A:469-876 [91934]
    Other proteins in same PDB: d1nk9a1
    complexed with mg, so4, suc
18. Domain for 1nkb:
  - Domain d1nkba2: 1nkb A:469-876 [91936]
    Other proteins in same PDB: d1nkba1
    complexed with mg, so4, suc
19. Domain for 1nkc:
  - Domain d1nkca2: 1nkc A:469-876 [91938]
    Other proteins in same PDB: d1nkca1
    complexed with mg, so4, suc
20. Domain for 1nke:
  - Domain d1nkea2: 1nke A:469-876 [91940]
    Other proteins in same PDB: d1nkea1
    complexed with dcp, mg, so4, suc
21. Domain for 1u45:
  - Domain d1u45a2: 1u45 A:469-876 [107655]
    Other proteins in same PDB: d1u45a1
    complexed with 8og, mg, so4, suc
22. Domain for 1u47:
  - Domain d1u47a2: 1u47 A:469-876 [107659]
    Other proteins in same PDB: d1u47a1
    complexed with 8og, mg, so4, suc
23. Domain for 1u48:
  - Domain d1u48a2: 1u48 A:469-876 [107661]
    Other proteins in same PDB: d1u48a1
    complexed with 8og, mg, so4, suc
24. Domain for 1u49:
  - Domain d1u49a2: 1u49 A:469-876 [107663]
    Other proteins in same PDB: d1u49a1
    complexed with 8og, mg, so4, suc
25. Domain for 1u4b:
  - Domain d1u4ba2: 1u4b A:469-876 [107665]
    Other proteins in same PDB: d1u4ba1
    complexed with 8og, mg, so4, suc
26. Domain for 1ua0:
  - Domain d1ua0a2: 1ua0 A:469-876 [107754]
    Other proteins in same PDB: d1ua0a1
    complexed with af, so4, suc
27. Domain for 1ua1:
  - Domain d1ua1a2: 1ua1 A:469-876 [107756]
    Other proteins in same PDB: d1ua1a1
    complexed with af, so4
28. Domain for 1xc9:
  - Domain d1xc9a2: 1xc9 A:469-876 [115112]
    Other proteins in same PDB: d1xc9a1
    complexed with bp, mg, so4, suc
29. Domain for 1xwl:
  - Domain d1xwla2: 1xwl A:469-876 [43001]
    Other proteins in same PDB: d1xwla1
    complexed with so4
30. Domain for 2bdp:
  - Domain d2bdpa2: 2bdp A:469-876 [43002]
    Other proteins in same PDB: d2bdpa1
    protein/DNA complex; complexed with mg, so4
31. Domain for 2hhq:
  - Domain d2hhqa2: 2hhq A:469-876 [136507]
    Other proteins in same PDB: d2hhqa1
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
32. Domain for 2hhs:
  - Domain d2hhsa2: 2hhs A:469-876 [136509]
    Other proteins in same PDB: d2hhsa1
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
33. Domain for 2hht:
  - Domain d2hhta2: 2hht A:469-876 [136511]
    Other proteins in same PDB: d2hhta1
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
34. Domain for 2hhu:
  - Domain d2hhua2: 2hhu A:469-876 [136513]
    Other proteins in same PDB: d2hhua1
    automatically matched to d1l3sa2
    complexed with 6og, dcp, mg, so4, suc
35. Domain for 2hhv:
  - Domain d2hhva2: 2hhv A:469-876 [136515]
    Other proteins in same PDB: d2hhva1
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
36. Domains for 2hhw:
  1. Domain d2hhwa2: 2hhw A:469-876 [136517]
    Other proteins in same PDB: d2hhwa1, d2hhwd1
    automatically matched to d1l3sa2
    complexed with 23t, 6og, ddg, mn, so4, suc; mutant
  2. Domain d2hhwd2: 2hhw D:469-876 [136519]
    Other proteins in same PDB: d2hhwa1, d2hhwd1
    automatically matched to d1l3sa2
    complexed with 23t, 6og, ddg, mn, so4, suc; mutant
37. Domain for 2hhx:
  - Domain d2hhxa2: 2hhx A:469-876 [136521]
    Other proteins in same PDB: d2hhxa1
    automatically matched to d1l3sa2
    complexed with 6og, so4, suc
38. Domains for 2hvh:
  1. Domain d2hvha2: 2hvh A:469-876 [136805]
    Other proteins in same PDB: d2hvha1, d2hvhd1
    automatically matched to d1l3sa2
    complexed with 6og, dct, ddg, mn, so4, suc
  2. Domain d2hvhd2: 2hvh D:469-876 [136807]
    Other proteins in same PDB: d2hvha1, d2hvhd1
    automatically matched to d1l3sa2
    complexed with 6og, dct, ddg, mn, so4, suc
39. Domains for 2hvi:
  1. Domain d2hvia2: 2hvi A:469-876 [136809]
    Other proteins in same PDB: d2hvia1, d2hvid1
    automatically matched to d1l3sa2
    complexed with dct, ddg, mg, so4, suc
  2. Domain d2hvid2: 2hvi D:469-876 [136811]
    Other proteins in same PDB: d2hvia1, d2hvid1
    automatically matched to d1l3sa2
    complexed with dct, ddg, mg, so4, suc
40. Domain for 2hw3:
  - Domain d2hw3a2: 2hw3 A:469-876 [136820]
    Other proteins in same PDB: d2hw3a1
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
41. Domain for 3bdp:
  - Domain d3bdpa2: 3bdp A:469-876 [43004]
    Other proteins in same PDB: d3bdpa1
    protein/DNA complex; complexed with 2dt, so4
42. Domain for 4bdp:
  - Domain d4bdpa2: 4bdp A:469-876 [43003]
    Other proteins in same PDB: d4bdpa1
    protein/DNA complex; complexed with mg, so4
Escherichia coli [TaxId:562] [56675] (14 PDB entries)
1. Domain for 1d8y:
  - Domain d1d8ya2: 1d8y A:519-928 [42977]
    Other proteins in same PDB: d1d8ya1
2. Domain for 1d9d:
  - Domain d1d9da2: 1d9d A:519-928 [42981]
    Other proteins in same PDB: d1d9da1
3. Domain for 1d9f:
  - Domain d1d9fa2: 1d9f A:519-928 [42984]
    Other proteins in same PDB: d1d9fa1
4. Domain for 1dpi:
  - Domain d1dpia2: 1dpi A:519-928 [42985]
    Other proteins in same PDB: d1dpia1
    complexed with zn
5. Domain for 1kfd:
  - Domain d1kfda2: 1kfd A:519-928 [42987]
    Other proteins in same PDB: d1kfda1
    complexed with ctp
6. Domain for 1kfs:
  - Domain d1kfsa2: 1kfs A:519-928 [42974]
    Other proteins in same PDB: d1kfsa1
    protein/DNA complex; complexed with mg, zn; mutant
7. Domain for 1kln:
  - Domain d1klna2: 1kln A:519-928 [42986]
    Other proteins in same PDB: d1klna1
    protein/DNA complex; complexed with zn; mutant
8. Domain for 1krp:
  - Domain d1krpa2: 1krp A:519-928 [42978]
    Other proteins in same PDB: d1krpa1
    protein/DNA complex; complexed with pst, zn; mutant
9. Domain for 1ksp:
  - Domain d1kspa2: 1ksp A:519-928 [42980]
    Other proteins in same PDB: d1kspa1
    protein/DNA complex; complexed with pst, zn; mutant
10. Domain for 1qsl:
  - Domain d1qsla2: 1qsl A:519-928 [42979]
    Other proteins in same PDB: d1qsla1
    complexed with eu; mutant
11. Domain for 2kfn:
  - Domain d2kfna2: 2kfn A:519-928 [42975]
    Other proteins in same PDB: d2kfna1
    protein/DNA complex; complexed with mg, mn, s, zn
12. Domain for 2kfz:
  - Domain d2kfza2: 2kfz A:519-928 [42976]
    Other proteins in same PDB: d2kfza1
    protein/DNA complex; complexed with mg, s, zn
13. Domain for 2kzm:
  - Domain d2kzma2: 2kzm A:519-928 [42983]
    Other proteins in same PDB: d2kzma1
    protein/DNA complex; complexed with mn, zn
14. Domain for 2kzz:
  - Domain d2kzza2: 2kzz A:519-928 [42982]
    Other proteins in same PDB: d2kzza1
    protein/DNA complex; complexed with zn
Thermus aquaticus [TaxId:271] [56676] (13 PDB entries)
1. Domain for 1bgx:
  - Domain d1bgxt4: 1bgx T:423-832 [42992]
    Other proteins in same PDB: d1bgxh1, d1bgxh2, d1bgxl1, d1bgxl2, d1bgxt1, d1bgxt2, d1bgxt3
2. Domain for 1cmw:
  - Domain d1cmwa4: 1cmw A:423-832 [42994]
    Other proteins in same PDB: d1cmwa1, d1cmwa2, d1cmwa3
3. Domain for 1jxe:
  - Domain d1jxea2: 1jxe A:423-832 [42998]
    Other proteins in same PDB: d1jxea1
4. Domain for 1ktq:
  - Domain d1ktqa2: 1ktq A:423-832 [42996]
    Other proteins in same PDB: d1ktqa1
5. Domain for 1qss:
  - Domain d1qssa2: 1qss A:423-831 [42990]
    Other proteins in same PDB: d1qssa1
    protein/DNA complex; complexed with ddg, dg3, mg; mutant
6. Domain for 1qsy:
  - Domain d1qsya2: 1qsy A:423-831 [42993]
    Other proteins in same PDB: d1qsya1
    protein/DNA complex; complexed with 2da, dad, mg; mutant
7. Domain for 1qtm:
  - Domain d1qtma2: 1qtm A:423-831 [42988]
    Other proteins in same PDB: d1qtma1
    protein/DNA complex; complexed with 2dt, mg, ttp
8. Domain for 1taq:
  - Domain d1taqa4: 1taq A:423-832 [42991]
    Other proteins in same PDB: d1taqa1, d1taqa2, d1taqa3
    complexed with bgl, zn; mutant
9. Domain for 1tau:
  - Domain d1taua4: 1tau A:423-832 [43000]
    Other proteins in same PDB: d1taua1, d1taua2, d1taua3
    protein/DNA complex; complexed with bgl, zn
10. Domain for 2ktq:
  - Domain d2ktqa2: 2ktq A:423-832 [42995]
    Other proteins in same PDB: d2ktqa1
    complexed with ctp, ddc, mg
11. Domain for 3ktq:
  - Domain d3ktqa2: 3ktq A:423-831 [42989]
    Other proteins in same PDB: d3ktqa1
    complexed with ctp, ddc, mg
12. Domain for 4ktq:
  - Domain d4ktqa2: 4ktq A:423-832 [42999]
    Other proteins in same PDB: d4ktqa1
    complexed with ddc
13. Domain for 5ktq:
  - Domain d5ktqa2: 5ktq A:423-832 [42997]
    Other proteins in same PDB: d5ktqa1
    complexed with ctp

More info for Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I

Timeline for Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I:

Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I first appeared (with stable ids) in SCOP 1.55
Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I appears in SCOP 1.71
Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I appears in SCOP 1.75
Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I appears in the current release, SCOPe 2.08