SCOPe 2.06: Protein: Catalase II

Lineage for Protein: Catalase II

Root: SCOPe 2.06
Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
Fold e.5: Heme-dependent catalase-like [56633] (1 superfamily)
contains an (8,10) beta-barrel and an all-alpha domain
Superfamily e.5.1: Heme-dependent catalase-like [56634] (3 families)
Family e.5.1.1: Heme-dependent catalases [56635] (3 proteins)
Protein Catalase II [56642] (1 species)
contains additional flavodoxin-like domain at C-terminus

Species:

Escherichia coli, HPII [TaxId:562] [56643] (16 PDB entries)
1. Domains for 1cf9:
  1. Domain d1cf9a2: 1cf9 A:27-597 [42815]
    Other proteins in same PDB: d1cf9a1, d1cf9b1, d1cf9c1, d1cf9d1
    complexed with hem; mutant
  2. Domain d1cf9b2: 1cf9 B:27-597 [42816]
    Other proteins in same PDB: d1cf9a1, d1cf9b1, d1cf9c1, d1cf9d1
    complexed with hem; mutant
  3. Domain d1cf9c2: 1cf9 C:27-597 [42817]
    Other proteins in same PDB: d1cf9a1, d1cf9b1, d1cf9c1, d1cf9d1
    complexed with hem; mutant
  4. Domain d1cf9d2: 1cf9 D:27-597 [42818]
    Other proteins in same PDB: d1cf9a1, d1cf9b1, d1cf9c1, d1cf9d1
    complexed with hem; mutant
2. Domains for 1gg9:
  1. Domain d1gg9a2: 1gg9 A:27-597 [42819]
    Other proteins in same PDB: d1gg9a1, d1gg9b1, d1gg9c1, d1gg9d1
    complexed with hem
  2. Domain d1gg9b2: 1gg9 B:27-597 [42820]
    Other proteins in same PDB: d1gg9a1, d1gg9b1, d1gg9c1, d1gg9d1
    complexed with hem
  3. Domain d1gg9c2: 1gg9 C:27-597 [42821]
    Other proteins in same PDB: d1gg9a1, d1gg9b1, d1gg9c1, d1gg9d1
    complexed with hem
  4. Domain d1gg9d2: 1gg9 D:27-597 [42822]
    Other proteins in same PDB: d1gg9a1, d1gg9b1, d1gg9c1, d1gg9d1
    complexed with hem
3. Domains for 1gge:
  1. Domain d1ggea2: 1gge A:27-597 [42823]
    Other proteins in same PDB: d1ggea1, d1ggeb1, d1ggec1, d1gged1
    complexed with hdd
  2. Domain d1ggeb2: 1gge B:27-597 [42824]
    Other proteins in same PDB: d1ggea1, d1ggeb1, d1ggec1, d1gged1
    complexed with hdd
  3. Domain d1ggec2: 1gge C:27-597 [42825]
    Other proteins in same PDB: d1ggea1, d1ggeb1, d1ggec1, d1gged1
    complexed with hdd
  4. Domain d1gged2: 1gge D:27-597 [42826]
    Other proteins in same PDB: d1ggea1, d1ggeb1, d1ggec1, d1gged1
    complexed with hdd
4. Domains for 1ggf:
  1. Domain d1ggfa2: 1ggf A:27-597 [42843]
    Other proteins in same PDB: d1ggfa1, d1ggfb1, d1ggfc1, d1ggfd1
    complexed with hem, peo
  2. Domain d1ggfb2: 1ggf B:27-597 [42844]
    Other proteins in same PDB: d1ggfa1, d1ggfb1, d1ggfc1, d1ggfd1
    complexed with hem, peo
  3. Domain d1ggfc2: 1ggf C:27-597 [42845]
    Other proteins in same PDB: d1ggfa1, d1ggfb1, d1ggfc1, d1ggfd1
    complexed with hem, peo
  4. Domain d1ggfd2: 1ggf D:27-597 [42846]
    Other proteins in same PDB: d1ggfa1, d1ggfb1, d1ggfc1, d1ggfd1
    complexed with hem, peo
5. Domains for 1ggh:
  1. Domain d1ggha2: 1ggh A:27-597 [42839]
    Other proteins in same PDB: d1ggha1, d1gghb1, d1gghc1, d1gghd1
    complexed with hem
  2. Domain d1gghb2: 1ggh B:27-597 [42840]
    Other proteins in same PDB: d1ggha1, d1gghb1, d1gghc1, d1gghd1
    complexed with hem
  3. Domain d1gghc2: 1ggh C:27-597 [42841]
    Other proteins in same PDB: d1ggha1, d1gghb1, d1gghc1, d1gghd1
    complexed with hem
  4. Domain d1gghd2: 1ggh D:27-597 [42842]
    Other proteins in same PDB: d1ggha1, d1gghb1, d1gghc1, d1gghd1
    complexed with hem
6. Domains for 1ggj:
  1. Domain d1ggja2: 1ggj A:27-597 [42831]
    Other proteins in same PDB: d1ggja1, d1ggjb1, d1ggjc1, d1ggjd1
    complexed with hdd
  2. Domain d1ggjb2: 1ggj B:27-597 [42832]
    Other proteins in same PDB: d1ggja1, d1ggjb1, d1ggjc1, d1ggjd1
    complexed with hdd
  3. Domain d1ggjc2: 1ggj C:27-597 [42833]
    Other proteins in same PDB: d1ggja1, d1ggjb1, d1ggjc1, d1ggjd1
    complexed with hdd
  4. Domain d1ggjd2: 1ggj D:27-597 [42834]
    Other proteins in same PDB: d1ggja1, d1ggjb1, d1ggjc1, d1ggjd1
    complexed with hdd
7. Domains for 1ggk:
  1. Domain d1ggka2: 1ggk A:27-597 [42827]
    Other proteins in same PDB: d1ggka1, d1ggkb1, d1ggkc1, d1ggkd1
    complexed with hem
  2. Domain d1ggkb2: 1ggk B:27-597 [42828]
    Other proteins in same PDB: d1ggka1, d1ggkb1, d1ggkc1, d1ggkd1
    complexed with hem
  3. Domain d1ggkc2: 1ggk C:27-597 [42829]
    Other proteins in same PDB: d1ggka1, d1ggkb1, d1ggkc1, d1ggkd1
    complexed with hem
  4. Domain d1ggkd2: 1ggk D:27-597 [42830]
    Other proteins in same PDB: d1ggka1, d1ggkb1, d1ggkc1, d1ggkd1
    complexed with hem
8. Domains for 1iph:
  1. Domain d1ipha2: 1iph A:27-597 [42847]
    Other proteins in same PDB: d1ipha1, d1iphb1, d1iphc1, d1iphd1
    complexed with hem
  2. Domain d1iphb2: 1iph B:27-597 [42848]
    Other proteins in same PDB: d1ipha1, d1iphb1, d1iphc1, d1iphd1
    complexed with hem
  3. Domain d1iphc2: 1iph C:27-597 [42849]
    Other proteins in same PDB: d1ipha1, d1iphb1, d1iphc1, d1iphd1
    complexed with hem
  4. Domain d1iphd2: 1iph D:27-597 [42850]
    Other proteins in same PDB: d1ipha1, d1iphb1, d1iphc1, d1iphd1
    complexed with hem
9. Domains for 1p7y:
  1. Domain d1p7ya2: 1p7y A:27-597 [94322]
    Other proteins in same PDB: d1p7ya1, d1p7yb1, d1p7yc1, d1p7yd1
    complexed with hem
  2. Domain d1p7yb2: 1p7y B:27-597 [94324]
    Other proteins in same PDB: d1p7ya1, d1p7yb1, d1p7yc1, d1p7yd1
    complexed with hem
  3. Domain d1p7yc2: 1p7y C:27-597 [94326]
    Other proteins in same PDB: d1p7ya1, d1p7yb1, d1p7yc1, d1p7yd1
    complexed with hem
  4. Domain d1p7yd2: 1p7y D:27-597 [94328]
    Other proteins in same PDB: d1p7ya1, d1p7yb1, d1p7yc1, d1p7yd1
    complexed with hem
10. Domains for 1p7z:
  1. Domain d1p7za2: 1p7z A:27-597 [94330]
    Other proteins in same PDB: d1p7za1, d1p7zb1, d1p7zc1, d1p7zd1
    complexed with hem
  2. Domain d1p7zb2: 1p7z B:27-597 [94332]
    Other proteins in same PDB: d1p7za1, d1p7zb1, d1p7zc1, d1p7zd1
    complexed with hem
  3. Domain d1p7zc2: 1p7z C:27-597 [94334]
    Other proteins in same PDB: d1p7za1, d1p7zb1, d1p7zc1, d1p7zd1
    complexed with hem
  4. Domain d1p7zd2: 1p7z D:27-597 [94336]
    Other proteins in same PDB: d1p7za1, d1p7zb1, d1p7zc1, d1p7zd1
    complexed with hem
11. Domains for 1p80:
  1. Domain d1p80a2: 1p80 A:27-597 [94338]
    Other proteins in same PDB: d1p80a1, d1p80b1, d1p80c1, d1p80d1
    complexed with hem
  2. Domain d1p80b2: 1p80 B:27-597 [94340]
    Other proteins in same PDB: d1p80a1, d1p80b1, d1p80c1, d1p80d1
    complexed with hem
  3. Domain d1p80c2: 1p80 C:27-597 [94342]
    Other proteins in same PDB: d1p80a1, d1p80b1, d1p80c1, d1p80d1
    complexed with hem
  4. Domain d1p80d2: 1p80 D:27-597 [94344]
    Other proteins in same PDB: d1p80a1, d1p80b1, d1p80c1, d1p80d1
    complexed with hem
12. Domains for 1p81:
  1. Domain d1p81a2: 1p81 A:27-597 [94346]
    Other proteins in same PDB: d1p81a1, d1p81b1, d1p81c1, d1p81d1
    complexed with hdd
  2. Domain d1p81b2: 1p81 B:27-597 [94348]
    Other proteins in same PDB: d1p81a1, d1p81b1, d1p81c1, d1p81d1
    complexed with hdd
  3. Domain d1p81c2: 1p81 C:27-597 [94350]
    Other proteins in same PDB: d1p81a1, d1p81b1, d1p81c1, d1p81d1
    complexed with hdd
  4. Domain d1p81d2: 1p81 D:27-597 [94352]
    Other proteins in same PDB: d1p81a1, d1p81b1, d1p81c1, d1p81d1
    complexed with hdd
13. Domains for 1qf7:
  1. Domain d1qf7a2: 1qf7 A:27-597 [42835]
    Other proteins in same PDB: d1qf7a1, d1qf7b1, d1qf7c1, d1qf7d1
    complexed with hem; mutant
  2. Domain d1qf7b2: 1qf7 B:27-597 [42836]
    Other proteins in same PDB: d1qf7a1, d1qf7b1, d1qf7c1, d1qf7d1
    complexed with hem; mutant
  3. Domain d1qf7c2: 1qf7 C:27-597 [42837]
    Other proteins in same PDB: d1qf7a1, d1qf7b1, d1qf7c1, d1qf7d1
    complexed with hem; mutant
  4. Domain d1qf7d2: 1qf7 D:27-597 [42838]
    Other proteins in same PDB: d1qf7a1, d1qf7b1, d1qf7c1, d1qf7d1
    complexed with hem; mutant
14. Domains for 1qws:
  1. Domain d1qwsa2: 1qws A:27-597 [96494]
    Other proteins in same PDB: d1qwsa1, d1qwsb1, d1qwsc1, d1qwsd1
    complexed with hem
  2. Domain d1qwsb2: 1qws B:27-597 [96496]
    Other proteins in same PDB: d1qwsa1, d1qwsb1, d1qwsc1, d1qwsd1
    complexed with hem
  3. Domain d1qwsc2: 1qws C:27-597 [96498]
    Other proteins in same PDB: d1qwsa1, d1qwsb1, d1qwsc1, d1qwsd1
    complexed with hem
  4. Domain d1qwsd2: 1qws D:27-597 [96500]
    Other proteins in same PDB: d1qwsa1, d1qwsb1, d1qwsc1, d1qwsd1
    complexed with hem
15. Domain for 3vu3:
  - Domain d3vu3a1: 3vu3 A:27-597 [229173]
    Other proteins in same PDB: d3vu3a2, d3vu3c_, d3vu3d_, d3vu3e_, d3vu3f_, d3vu3g_, d3vu3h_
    automated match to d1ggea2
    protein/RNA complex; complexed with hem
16. Domains for 4bfl:
  1. Domain d4bfla1: 4bfl A:10-597 [234153]
    Other proteins in same PDB: d4bfla2, d4bflb2, d4bflc2, d4bfld2
    automated match to d4bfld1
    complexed with edo, hem
  2. Domain d4bflb1: 4bfl B:9-597 [234155]
    Other proteins in same PDB: d4bfla2, d4bflb2, d4bflc2, d4bfld2
    automated match to d4bfld1
    complexed with edo, hem
  3. Domain d4bflc1: 4bfl C:11-597 [234157]
    Other proteins in same PDB: d4bfla2, d4bflb2, d4bflc2, d4bfld2
    automated match to d4bfld1
    complexed with edo, hem
  4. Domain d4bfld1: 4bfl D:19-597 [219464]
    Other proteins in same PDB: d4bfla2, d4bflb2, d4bflc2, d4bfld2
    automated match to d1ggea2
    complexed with edo, hem

More info for Protein Catalase II from e.5.1.1: Heme-dependent catalases

Timeline for Protein Catalase II from e.5.1.1: Heme-dependent catalases:

Protein Catalase II from e.5.1.1: Heme-dependent catalases first appeared (with stable ids) in SCOP 1.55, called Protein Catalase II from e.5.1.1: Heme-linked catalases
Protein Catalase II from e.5.1.1: Heme-dependent catalases appears in SCOPe 2.05
Protein Catalase II from e.5.1.1: Heme-dependent catalases appears in SCOPe 2.07
Protein Catalase II from e.5.1.1: Heme-dependent catalases appears in the current release, SCOPe 2.08