SCOPe 2.08: Family e.5.1.1: Heme-dependent catalases

Lineage for Family e.5.1.1: Heme-dependent catalases

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.5: Heme-dependent catalase-like [56633] (1 superfamily)
   contains an (8,10) beta-barrel and an all-alpha domain

4. Superfamily e.5.1: Heme-dependent catalase-like [56634] (3 families)

5. Family e.5.1.1: Heme-dependent catalases [56635] (3 proteins)

Proteins:

1. Catalase I [56636] (8 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56639] (1 PDB entry)

   2. Species Cow (Bos taurus) [TaxId:9913] [56637] (6 PDB entries)

   3. Species Enterococcus faecalis [TaxId:1351] [103393] (1 PDB entry)

   4. Species Helicobacter pylori [TaxId:210] [103392] (4 PDB entries)

   5. Species Human (Homo sapiens) [TaxId:9606] [56638] (6 PDB entries)

   6. Species Micrococcus lysodeikticus [TaxId:1270] [56641] (4 PDB entries)

   7. Species Proteus mirabilis [TaxId:584] [56640] (11 PDB entries)

   8. Species Pseudomonas syringae [TaxId:317] [75599] (1 PDB entry)

2. Catalase II [56642] (1 species)
   contains additional flavodoxin-like domain at C-terminus

   • Species Escherichia coli, HPII [TaxId:562] [56643] (17 PDB entries)

3. automated matches [190051] (11 species)
   not a true protein

   1. Species Acinetobacter sp. [TaxId:466088] [391159] (1 PDB entry)

   2. Species Cow (Bos taurus) [TaxId:9913] [186772] (9 PDB entries)

   3. Species Escherichia coli K-12 [TaxId:83333] [226042] (19 PDB entries)

   4. Species Escherichia coli [TaxId:1432555] [382944] (1 PDB entry)

   5. Species Escherichia coli [TaxId:562] [233717] (6 PDB entries)

   6. Species Escherichia coli [TaxId:83333] [394139] (3 PDB entries)

   7. Species Komagataella pastoris [TaxId:4922] [381812] (1 PDB entry)

   8. Species Milk yeast (Kluyveromyces lactis) [TaxId:28985] [382142] (1 PDB entry)

   9. Species Pichia angusta [TaxId:4905] [190000] (1 PDB entry)

   10. Species Pseudomonas aeruginosa, PA01 [TaxId:208964] [196661] (1 PDB entry)

   11. Species Vibrio salmonicida [TaxId:316275] [187875] (1 PDB entry)

More info for Family e.5.1.1: Heme-dependent catalases

Timeline for Family e.5.1.1: Heme-dependent catalases:

• Family e.5.1.1: Heme-dependent catalases first appeared (with stable ids) in SCOP 1.55, called Family e.5.1.1: Heme-linked catalases
  
• Family e.5.1.1: Heme-dependent catalases appears in SCOPe 2.07