SCOPe 2.07: Protein: Penicillin-binding protein 2x (pbp-2x), transpeptidase domain

Lineage for Protein: Penicillin-binding protein 2x (pbp-2x), transpeptidase domain

Root: SCOPe 2.07
Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
contains a cluster of helices and an alpha+beta sandwich
Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families)
Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase [56602] (19 proteins)
Protein Penicillin-binding protein 2x (pbp-2x), transpeptidase domain [56624] (1 species)

Species:

Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [56625] (10 PDB entries)
1. Domains for 1k25:
  1. Domain d1k25a4: 1k25 A:264-631 [68036]
    Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a3, d1k25b1, d1k25b2, d1k25b3, d1k25c1, d1k25c2, d1k25c3, d1k25d1, d1k25d2, d1k25d3
  2. Domain d1k25b4: 1k25 B:1264-1631 [68040]
    Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a3, d1k25b1, d1k25b2, d1k25b3, d1k25c1, d1k25c2, d1k25c3, d1k25d1, d1k25d2, d1k25d3
  3. Domain d1k25c4: 1k25 C:2264-2631 [68044]
    Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a3, d1k25b1, d1k25b2, d1k25b3, d1k25c1, d1k25c2, d1k25c3, d1k25d1, d1k25d2, d1k25d3
  4. Domain d1k25d4: 1k25 D:3264-3612 [68048]
    Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a3, d1k25b1, d1k25b2, d1k25b3, d1k25c1, d1k25c2, d1k25c3, d1k25d1, d1k25d2, d1k25d3
2. Domain for 1pmd:
  - Domain d1pmda4: 1pmd A:264-630 [42771]
    Other proteins in same PDB: d1pmda1, d1pmda2, d1pmda3
    CA-atoms only
3. Domain for 1pyy:
  - Domain d1pyya4: 1pyy A:264-631 [95388]
    Other proteins in same PDB: d1pyya1, d1pyya2, d1pyya3
    complexed with mpd, osu, so4; mutant
4. Domain for 1qme:
  - Domain d1qmea4: 1qme A:264-620 [42769]
    Other proteins in same PDB: d1qmea1, d1qmea2, d1qmea3
    complexed with so4
5. Domain for 1qmf:
  - Domain d1qmfa4: 1qmf A:264-620 [42770]
    Other proteins in same PDB: d1qmfa1, d1qmfa2, d1qmfa3
    complexed with ces, kef
6. Domains for 1rp5:
  1. Domain d1rp5a4: 1rp5 A:264-631 [97697]
    Other proteins in same PDB: d1rp5a1, d1rp5a2, d1rp5a3, d1rp5b1, d1rp5b2, d1rp5b3
    complexed with so4
  2. Domain d1rp5b4: 1rp5 B:264-631 [97701]
    Other proteins in same PDB: d1rp5a1, d1rp5a2, d1rp5a3, d1rp5b1, d1rp5b2, d1rp5b3
    complexed with so4
7. Domains for 2z2l:
  1. Domain d2z2lb_: 2z2l B: [153937]
    Other proteins in same PDB: d2z2lc1, d2z2lc2, d2z2lf1, d2z2lf2
    automated match to d2zc3b1
    complexed with so4
  2. Domain d2z2le_: 2z2l E: [153940]
    Other proteins in same PDB: d2z2lc1, d2z2lc2, d2z2lf1, d2z2lf2
    automated match to d2zc3b1
    complexed with so4
8. Domains for 2z2m:
  1. Domain d2z2mb_: 2z2m B: [153943]
    Other proteins in same PDB: d2z2mc1, d2z2mc2, d2z2mf1, d2z2mf2
    automated match to d2zc3b1
    complexed with cds, so4
  2. Domain d2z2me_: 2z2m E: [153946]
    Other proteins in same PDB: d2z2mc1, d2z2mc2, d2z2mf1, d2z2mf2
    automated match to d2zc3b1
    complexed with cds, so4
9. Domains for 2zc3:
  1. Domain d2zc3b_: 2zc3 B: [154324]
    Other proteins in same PDB: d2zc3c1, d2zc3c2, d2zc3f1, d2zc3f2
    automated match to d2zc3b1
    complexed with bmg, so4
  2. Domain d2zc3e_: 2zc3 E: [154327]
    Other proteins in same PDB: d2zc3c1, d2zc3c2, d2zc3f1, d2zc3f2
    automated match to d2zc4b1
    complexed with bmg, so4
10. Domains for 2zc4:
  1. Domain d2zc4b_: 2zc4 B: [154330]
    Other proteins in same PDB: d2zc4c1, d2zc4c2, d2zc4f1, d2zc4f2
    automated match to d2zc4b1
    complexed with so4, teb
  2. Domain d2zc4e_: 2zc4 E: [154333]
    Other proteins in same PDB: d2zc4c1, d2zc4c2, d2zc4f1, d2zc4f2
    automated match to d2zc4b1
    complexed with so4, teb

More info for Protein Penicillin-binding protein 2x (pbp-2x), transpeptidase domain from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase

Timeline for Protein Penicillin-binding protein 2x (pbp-2x), transpeptidase domain from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase:

Protein Penicillin-binding protein 2x (pbp-2x), transpeptidase domain from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase first appeared (with stable ids) in SCOP 1.55
Protein Penicillin-binding protein 2x (pbp-2x), transpeptidase domain from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase appears in SCOPe 2.06
Protein Penicillin-binding protein 2x (pbp-2x), transpeptidase domain from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase appears in the current release, SCOPe 2.08