Lineage for Protein: Class D beta-lactamase

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3012718Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 3012719Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families) (S)
  5. 3012720Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase [56602] (19 proteins)
    in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
  6. 3013280Protein Class D beta-lactamase [56622] (4 species)

Species:

  1. 3013281Escherichia coli, OXA-1 [TaxId:562] [82837] (4 PDB entries)
    1. Domains for 1m6k:
      1. 3013286Domain d1m6ka_: 1m6k A: [78695]
        complexed with mpd
      2. 3013287Domain d1m6kb_: 1m6k B: [78696]
        complexed with mpd
    2. Domains for 3isg:
      1. 3013292Domain d3isga_: 3isg A: [178589]
        automated match to d1m6ka_
        complexed with drw, mpd
      2. 3013293Domain d3isgb_: 3isg B: [178590]
        automated match to d1m6ka_
        complexed with drw, mpd
    3. Domains for 4f7y:
      1. 3013282Domain d4f7ya_: 4f7y A: [307347]
        automated match to d4mllb_
        complexed with mpd, po4, soy
      2. 3013283Domain d4f7yb_: 4f7y B: [307348]
        automated match to d4mllb_
        complexed with mpd, po4, soy
      3. 3013284Domain d4f7yc_: 4f7y C: [307349]
        automated match to d4mllb_
        complexed with mpd, po4, soy
      4. 3013285Domain d4f7yd_: 4f7y D: [307350]
        automated match to d4mllb_
        complexed with mpd, po4, soy
    4. Domains for 4mll:
      1. 3013288Domain d4mlla_: 4mll A: [228263]
        automated match to d4f7yd_
        complexed with 1s6, mpd, po4
      2. 3013289Domain d4mllb_: 4mll B: [228264]
        automated match to d4f7yb_
        complexed with 1s6, mpd, po4
      3. 3013290Domain d4mllc_: 4mll C: [228265]
        automated match to d4f7yb_
        complexed with 1s6, mpd, po4
      4. 3013291Domain d4mlld_: 4mll D: [228262]
        automated match to d4f7yd_
        complexed with 1s6, mpd, po4
  2. 3013294Pseudomonas aeruginosa, OXA-10 [TaxId:287] [56623] (36 PDB entries)
    1. Domains for 1e3u:
      1. 3013353Domain d1e3ua_: 1e3u A: [42755]
        complexed with auc, edo, so4
      2. 3013354Domain d1e3ub_: 1e3u B: [42756]
        complexed with auc, edo, so4
      3. 3013355Domain d1e3uc_: 1e3u C: [42757]
        complexed with auc, edo, so4
      4. 3013356Domain d1e3ud_: 1e3u D: [42758]
        complexed with auc, edo, so4
    2. Domains for 1e4d:
      1. 3013315Domain d1e4da_: 1e4d A: [42759]
        complexed with edo, so4
      2. 3013316Domain d1e4db_: 1e4d B: [42760]
        complexed with edo, so4
      3. 3013317Domain d1e4dc_: 1e4d C: [42761]
        complexed with edo, so4
      4. 3013318Domain d1e4dd_: 1e4d D: [42762]
        complexed with edo, so4
    3. Domains for 1ewz:
      1. 3013367Domain d1ewza_: 1ewz A: [42765]
      2. 3013368Domain d1ewzb_: 1ewz B: [42766]
      3. 3013369Domain d1ewzc_: 1ewz C: [42767]
      4. 3013370Domain d1ewzd_: 1ewz D: [42768]
    4. Domains for 1fof:
      1. 3013331Domain d1fofa_: 1fof A: [42763]
        complexed with co, so4
      2. 3013332Domain d1fofb_: 1fof B: [42764]
        complexed with co, so4
    5. Domains for 1k4e:
      1. 3013347Domain d1k4ea1: 1k4e A:20-264 [68136]
        Other proteins in same PDB: d1k4ea2, d1k4eb2
        complexed with so4
      2. 3013348Domain d1k4eb1: 1k4e B:20-263 [68137]
        Other proteins in same PDB: d1k4ea2, d1k4eb2
        complexed with so4
    6. Domains for 1k4f:
      1. 3013301Domain d1k4fa_: 1k4f A: [68138]
        Other proteins in same PDB: d1k4fb2
        complexed with so4
      2. 3013302Domain d1k4fb1: 1k4f B:20-265 [68139]
        Other proteins in same PDB: d1k4fb2
        complexed with so4
    7. Domains for 1k54:
      1. 3013305Domain d1k54a_: 1k54 A: [68152]
        complexed with edo, hoq, so4
      2. 3013306Domain d1k54b_: 1k54 B: [68153]
        complexed with edo, hoq, so4
      3. 3013307Domain d1k54c_: 1k54 C: [68154]
        complexed with edo, hoq, so4
      4. 3013308Domain d1k54d_: 1k54 D: [68155]
        complexed with edo, hoq, so4
    8. Domains for 1k55:
      1. 3013297Domain d1k55a_: 1k55 A: [68156]
        complexed with edo, so4
      2. 3013298Domain d1k55b_: 1k55 B: [68157]
        complexed with edo, so4
      3. 3013299Domain d1k55c_: 1k55 C: [68158]
        complexed with edo, so4
      4. 3013300Domain d1k55d_: 1k55 D: [68159]
        complexed with edo, so4
    9. Domains for 1k56:
      1. 3013327Domain d1k56a_: 1k56 A: [68160]
        complexed with so4
      2. 3013328Domain d1k56b_: 1k56 B: [68161]
        complexed with so4
      3. 3013329Domain d1k56c_: 1k56 C: [68162]
        complexed with so4
      4. 3013330Domain d1k56d_: 1k56 D: [68163]
        complexed with so4
    10. Domains for 1k57:
      1. 3013321Domain d1k57a_: 1k57 A: [68164]
        complexed with so4
      2. 3013322Domain d1k57b_: 1k57 B: [68165]
        complexed with so4
      3. 3013323Domain d1k57c_: 1k57 C: [68166]
        complexed with so4
      4. 3013324Domain d1k57d_: 1k57 D: [68167]
        complexed with so4
    11. Domains for 1k6r:
      1. 3013363Domain d1k6ra1: 1k6r A:20-264 [84305]
        Other proteins in same PDB: d1k6ra2, d1k6rb2
        complexed with mx1
      2. 3013364Domain d1k6rb1: 1k6r B:20-264 [84306]
        Other proteins in same PDB: d1k6ra2, d1k6rb2
        complexed with mx1
    12. Domains for 1k6s:
      1. 3013345Domain d1k6sa_: 1k6s A: [84307]
        complexed with ca, iap, so4
      2. 3013346Domain d1k6sb_: 1k6s B: [84308]
        complexed with ca, iap, so4
    13. Domains for 2hp5:
      1. 3013377Domain d2hp5a1: 2hp5 A:20-264 [165193]
        Other proteins in same PDB: d2hp5a2, d2hp5b2
        automated match to d1k4fb_
        complexed with co, so4; mutant
      2. 3013378Domain d2hp5b1: 2hp5 B:20-264 [165194]
        Other proteins in same PDB: d2hp5a2, d2hp5b2
        automated match to d1k4fb_
        complexed with co, so4; mutant
      3. 3013379Domain d2hp5c_: 2hp5 C: [165195]
        Other proteins in same PDB: d2hp5a2, d2hp5b2
        automated match to d1k4fb_
        complexed with co, so4; mutant
      4. 3013380Domain d2hp5d_: 2hp5 D: [165196]
        Other proteins in same PDB: d2hp5a2, d2hp5b2
        automated match to d1k4fb_
        complexed with co, so4; mutant
    14. Domains for 2hp6:
      1. 3013349Domain d2hp6a_: 2hp6 A: [165197]
        Other proteins in same PDB: d2hp6b2
        automated match to d1k4fb_
        complexed with so4; mutant
      2. 3013350Domain d2hp6b1: 2hp6 B:20-265 [165198]
        Other proteins in same PDB: d2hp6b2
        automated match to d1k4fb_
        complexed with so4; mutant
    15. Domains for 2hp9:
      1. 3013371Domain d2hp9a_: 2hp9 A: [165199]
        Other proteins in same PDB: d2hp9b2
        automated match to d1k4fb_
        complexed with so4; mutant
      2. 3013372Domain d2hp9b1: 2hp9 B:20-265 [165200]
        Other proteins in same PDB: d2hp9b2
        automated match to d1k4fb_
        complexed with so4; mutant
    16. Domains for 2hpb:
      1. 3013359Domain d2hpba_: 2hpb A: [165201]
        Other proteins in same PDB: d2hpbb2
        automated match to d1k4fb_
        complexed with so4; mutant
      2. 3013360Domain d2hpbb1: 2hpb B:20-265 [165202]
        Other proteins in same PDB: d2hpbb2
        automated match to d1k4fb_
        complexed with so4; mutant
    17. Domains for 2rl3:
      1. 3013319Domain d2rl3a_: 2rl3 A: [168173]
        automated match to d1k4fb_
        complexed with edo, gol, so4; mutant
      2. 3013320Domain d2rl3b_: 2rl3 B: [168174]
        automated match to d1k4fb_
        complexed with edo, gol, so4; mutant
    18. Domains for 2wgi:
      1. 3013375Domain d2wgia_: 2wgi A: [169326]
        Other proteins in same PDB: d2wgib2
        automated match to d1k4fb_
        complexed with gol, pnm
      2. 3013376Domain d2wgib1: 2wgi B:20-265 [169327]
        Other proteins in same PDB: d2wgib2
        automated match to d1k4fb_
        complexed with gol, pnm
    19. Domains for 2wgv:
      1. 3013313Domain d2wgva_: 2wgv A: [169335]
        automated match to d1k4fb_
        complexed with cit, cl, gol, so4; mutant
      2. 3013314Domain d2wgvb_: 2wgv B: [169336]
        automated match to d1k4fb_
        complexed with cit, cl, gol, so4; mutant
    20. Domains for 2wgw:
      1. 3013309Domain d2wgwa_: 2wgw A: [169337]
        automated match to d1k4fb_
        complexed with gol, so4; mutant
      2. 3013310Domain d2wgwb_: 2wgw B: [169338]
        automated match to d1k4fb_
        complexed with gol, so4; mutant
    21. Domains for 2wkh:
      1. 3013357Domain d2wkha_: 2wkh A: [169403]
        Other proteins in same PDB: d2wkhb2
        automated match to d1k4fb_
        complexed with so4, zz7
      2. 3013358Domain d2wkhb1: 2wkh B:20-264 [169404]
        Other proteins in same PDB: d2wkhb2
        automated match to d1k4fb_
        complexed with so4, zz7
    22. Domains for 2wki:
      1. 3013339Domain d2wkia_: 2wki A: [169405]
        Other proteins in same PDB: d2wkib2
        automated match to d1k4fb_
        complexed with edo, gol, so4; mutant
      2. 3013340Domain d2wkib1: 2wki B:20-265 [169406]
        Other proteins in same PDB: d2wkib2
        automated match to d1k4fb_
        complexed with edo, gol, so4; mutant
    23. Domains for 2x01:
      1. 3013351Domain d2x01a_: 2x01 A: [169739]
        automated match to d1k4fb_
        complexed with dms, pg4, so4; mutant
      2. 3013352Domain d2x01b_: 2x01 B: [169740]
        automated match to d1k4fb_
        complexed with dms, pg4, so4; mutant
    24. Domains for 2x02:
      1. 3013295Domain d2x02a_: 2x02 A: [169741]
        Other proteins in same PDB: d2x02b2
        automated match to d1k4fb_
        complexed with dms, gol, pg4, so4
      2. 3013296Domain d2x02b1: 2x02 B:20-265 [169742]
        Other proteins in same PDB: d2x02b2
        automated match to d1k4fb_
        complexed with dms, gol, pg4, so4
    25. Domains for 3lce:
      1. 3013333Domain d3lcea_: 3lce A: [180180]
        automated match to d1e4dc_
        complexed with gol, lce, po4
      2. 3013334Domain d3lceb_: 3lce B: [180181]
        automated match to d1e4dc_
        complexed with gol, lce, po4
      3. 3013335Domain d3lcec_: 3lce C: [180182]
        automated match to d1e4dc_
        complexed with gol, lce, po4
      4. 3013336Domain d3lced_: 3lce D: [180183]
        automated match to d1e4dc_
        complexed with gol, lce, po4
    26. Domains for 4s2o:
      1. 3013361Domain d4s2oa_: 4s2o A: [269392]
        automated match to d1fofa_
        complexed with co, nxl
      2. 3013362Domain d4s2ob_: 4s2o B: [269391]
        automated match to d1fofa_
        complexed with co, nxl
    27. Domains for 4wz5:
      1. 3013341Domain d4wz5a_: 4wz5 A: [275707]
        automated match to d1k4fa_
        complexed with 3vu, co2, so4
      2. 3013342Domain d4wz5b_: 4wz5 B: [275706]
        automated match to d1k4fa_
        complexed with 3vu, co2, so4
      3. 3013343Domain d4wz5c_: 4wz5 C: [275711]
        automated match to d1k4fb_
        complexed with 3vu, co2, so4
      4. 3013344Domain d4wz5d_: 4wz5 D: [275712]
        automated match to d1k4fb_
        complexed with 3vu, co2, so4
    28. Domains for 5fq9:
      1. 3013325Domain d5fq9a1: 5fq9 A:20-264 [321287]
        Other proteins in same PDB: d5fq9a2, d5fq9b2
        automated match to d1k4fb_
        complexed with act, c6s, cl, gol, na
      2. 3013326Domain d5fq9b1: 5fq9 B:20-265 [321274]
        Other proteins in same PDB: d5fq9a2, d5fq9b2
        automated match to d1k4fb_
        complexed with act, c6s, cl, gol, na
    29. Domains for 5mmy:
      1. 3013365Domain d5mmya1: 5mmy A:20-264 [336620]
        Other proteins in same PDB: d5mmya2
        automated match to d1k4ea_
        complexed with cl, co3, dms, edo, epe, gol
      2. 3013366Domain d5mmyb_: 5mmy B: [336665]
        Other proteins in same PDB: d5mmya2
        automated match to d1k4ea_
        complexed with cl, co3, dms, edo, epe, gol
    30. Domains for 5mnu:
      1. 3013337Domain d5mnua1: 5mnu A:20-264 [336724]
        Other proteins in same PDB: d5mnua2, d5mnub2
        automated match to d2x02b_
        complexed with br, gol, na, nxl
      2. 3013338Domain d5mnub1: 5mnu B:20-265 [336594]
        Other proteins in same PDB: d5mnua2, d5mnub2
        automated match to d2x02b_
        complexed with br, gol, na, nxl
    31. Domains for 5mox:
      1. 3013311Domain d5moxa1: 5mox A:20-265 [336604]
        Other proteins in same PDB: d5moxa2, d5moxb2
        automated match to d2x02b_
        complexed with co2, gol, na, nxl
      2. 3013312Domain d5moxb1: 5mox B:20-265 [336626]
        Other proteins in same PDB: d5moxa2, d5moxb2
        automated match to d2x02b_
        complexed with co2, gol, na, nxl
    32. Domains for 5moz:
      1. 3013303Domain d5moza1: 5moz A:20-265 [336584]
        Other proteins in same PDB: d5moza2, d5mozb2
        automated match to d2x02b_
        complexed with cl, gol, iod, na, nxl
      2. 3013304Domain d5mozb1: 5moz B:20-265 [336649]
        Other proteins in same PDB: d5moza2, d5mozb2
        automated match to d2x02b_
        complexed with cl, gol, iod, na, nxl
    33. Domains for 6rtn:
      1. 3013373Domain d6rtna_: 6rtn A: [374055]
        Other proteins in same PDB: d6rtnb2
        automated match to d2wgwb_
        complexed with cl, kjk
      2. 3013374Domain d6rtnb1: 6rtn B:20-264 [374047]
        Other proteins in same PDB: d6rtnb2
        automated match to d2wgwb_
        complexed with cl, kjk
    34. Domains for 7b3r:
      1. 3084283Domain d7b3rb_: 7b3r B: [420600]
        automated match to d2wgwb_
        complexed with dha, kcx, na
      2. 3084292Domain d7b3ra_: 7b3r A: [420609]
        automated match to d2wgwb_
        complexed with dha, kcx, na
    35. Domains for 7b3s:
      1. 3084281Domain d7b3sa_: 7b3s A: [420598]
        automated match to d2wgwb_
        complexed with co2, dha, kcx, na, so4
      2. 3084311Domain d7b3sb_: 7b3s B: [420628]
        automated match to d2wgwb_
        complexed with co2, dha, kcx, na, so4
    36. Domains for 7b3u:
      1. 3084393Domain d7b3ub_: 7b3u B: [420710]
        automated match to d2wgwb_
        complexed with na, peg, so4, sww
      2. 3084482Domain d7b3ua_: 7b3u A: [420799]
        automated match to d2wgwb_
        complexed with na, peg, so4, sww
  3. 3013381Pseudomonas aeruginosa, OXA-13 [TaxId:287] [64474] (4 PDB entries)
    1. Domains for 1h5x:
      1. 3013384Domain d1h5xa_: 1h5x A: [70899]
        complexed with im2, so4
      2. 3013385Domain d1h5xb_: 1h5x B: [70900]
        complexed with im2, so4
    2. Domains for 1h8y:
      1. 3013386Domain d1h8ya_: 1h8y A: [60801]
        complexed with mer, so4
      2. 3013387Domain d1h8yb_: 1h8y B: [60802]
        complexed with mer, so4
    3. Domains for 1h8z:
      1. 3013382Domain d1h8za_: 1h8z A: [60803]
        complexed with so4
      2. 3013383Domain d1h8zb_: 1h8z B: [60804]
        complexed with so4
    4. Domains for 4yin:
      1. 3013388Domain d4yina_: 4yin A: [313037]
        automated match to d1h8ya_
        complexed with flc
      2. 3013389Domain d4yinb_: 4yin B: [313055]
        automated match to d1h8ya_
        complexed with flc
  4. 3013390Salmonella typhimurium, OXA-2 [TaxId:90371] [90083] (1 PDB entry)

More info for Protein Class D beta-lactamase from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase

Timeline for Protein Class D beta-lactamase from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase: