Lineage for Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase

  1. Root: SCOP 1.75
  2. 883176Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 883341Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 883342Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (3 families) (S)
  5. 883343Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase [56602] (18 proteins)

Proteins:

  1. 8833446-aminohexanoate-dimer hydrolase NylC [160972] (1 species)
    NylB'
  2. 883349AMPC beta-Lactamase, class C [56618] (3 species)
    contains small alpha+beta subdomain inserted in the common fold
    1. 883350Species Citrobacter freundii [TaxId:546] [56619] (3 PDB entries)
    2. 883356Species Enterobacter cloacae, P99, cephalosporinase [TaxId:550] [56620] (10 PDB entries)
      Uniprot P05364 22-380
      Uniprot P05364 22-381
      Uniprot P05364 22-380 ! Uniprot P05364 22-381
    3. 883369Species Escherichia coli, cephalosporinase [TaxId:562] [56621] (46 PDB entries)
  3. 883462beta-Lactamase, class A [56606] (15 species)
    1. 883463Species Bacillus licheniformis [TaxId:1402] [56612] (5 PDB entries)
    2. 883474Species Enterobacter cloacae, NMC-A carbapenemase [TaxId:550] [56613] (2 PDB entries)
    3. 883477Species Escherichia coli, TEM-1 [TaxId:562] [56607] (32 PDB entries)
    4. 883515Species Escherichia coli, TOHO-1 [TaxId:562] [56608] (5 PDB entries)
    5. 883521Species Klebsiella pneumoniae, SHV-1 [TaxId:573] [56609] (15 PDB entries)
      Uniprot Q5PSW7
      Uniprot P14557 22-286
      inhibited by tazobactam
      Uniprot Q5PSW7 ! Uniprot P14557 22-286
    6. 883537Species Klebsiella pneumoniae, SHV-2 [TaxId:573] [90082] (1 PDB entry)
      almost identical sequence to SHV-1
    7. 883539Species Klebsiella pneumoniae, TEM52 [TaxId:573] [64473] (1 PDB entry)
    8. 883546Species Mycobacterium fortuitum [TaxId:1766] [56615] (1 PDB entry)
    9. 883548Species Proteus vulgaris [TaxId:585] [75596] (1 PDB entry)
    10. 883551Species Pseudomonas aeruginosa, PER-1 [TaxId:287] [56616] (1 PDB entry)
    11. 883553Species Pseudomonas aeruginosa, PSE-4 carbenicillinase [TaxId:287] [56610] (2 PDB entries)
    12. 883556Species Serratia marcescens, Sme-1 [TaxId:615] [56617] (1 PDB entry)
      imipenem-hydrolyzing
    13. 883559Species Staphylococcus aureus [TaxId:1280] [56611] (16 PDB entries)
    14. 883578Species Stenotrophomonas maltophilia, L2 [TaxId:40324] [103374] (2 PDB entries)
    15. 883583Species Streptomyces albus G [TaxId:1962] [56614] (1 PDB entry)
  4. 883585Class D beta-lactamase [56622] (4 species)
    1. 883586Species Escherichia coli, OXA-1 [TaxId:562] [82837] (1 PDB entry)
    2. 883589Species Pseudomonas aeruginosa, OXA-10 [TaxId:287] [56623] (12 PDB entries)
    3. 883628Species Pseudomonas aeruginosa, OXA-13 [TaxId:287] [64474] (3 PDB entries)
    4. 883635Species Salmonella typhimurium, OXA-2 [TaxId:90371] [90083] (1 PDB entry)
  5. 883638D,D-carboxypeptidase DacA, N-terminal domain [118181] (1 species)
  6. 883644D-ala carboxypeptidase/transpeptidase [56603] (2 species)
    1. 883645Species Streptomyces sp., K15 [TaxId:1931] [56604] (7 PDB entries)
    2. 883653Species Streptomyces sp., R61 [TaxId:1931] [56605] (15 PDB entries)
      Uniprot P15555 34-378
      Uniprot P15555
      Uniprot P15555 34-378 ! Uniprot P15555
  7. 883669D-Amino acid amidase DaaA [144038] (1 species)
  8. 883695D-aminopeptidase, N-terminal domain [56626] (1 species)
  9. 883698Esterase EstB [69873] (1 species)
  10. 883704Pencillin binding protein 4 (PbpD), N-terminal domain [111287] (1 species)
  11. 883708Penicillin binding protein 2a (PBP2A), C-terminal domain [82838] (1 species)
  12. 883720Penicillin receptor BlaR, C-terminal domain [103375] (1 species)
    closely related to class D beta-lactamase
  13. 883723Penicillin-binding protein 1a, transpeptidase domain [144034] (1 species)
  14. 883727Penicillin-binding protein 1b, transpeptidase domain [144036] (1 species)
  15. 883732Penicillin-binding protein 2, PBP2 [160970] (1 species)
  16. 883741Penicillin-binding protein 2x (pbp-2x), transpeptidase domain [56624] (1 species)
  17. 883761Penicillin-binding protein 5, N-terminal domain [69875] (1 species)
  18. 883771Regulatory protein BlaR1 [111289] (1 species)

More info for Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase

Timeline for Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase: