SCOPe 2.05: Family d.169.1.1: C-type lectin domain

Lineage for Family d.169.1.1: C-type lectin domain

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.169: C-type lectin-like [56435] (1 superfamily)
   unusual fold

4. Superfamily d.169.1: C-type lectin-like [56436] (9 families)

5. Family d.169.1.1: C-type lectin domain [56437] (29 proteins)
   Pfam PF00059

Proteins:

1. Aggrecan core protein [111260] (1 species)

   • Species Norway rat (Rattus norvegicus) [TaxId:10116] [111261] (1 PDB entry)
     Uniprot P07897 1912-2037

2. CD69 [56442] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [56443] (3 PDB entries)

3. CD94 [56440] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [56441] (4 PDB entries)

4. DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin) [69855] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [69856] (6 PDB entries)
     Uniprot Q9NNX6 253-384

5. DC-SIGNR (DC-SIGN related receptor) [69857] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [69858] (3 PDB entries)
     Uniprot Q9NNX6 219-397

6. E-selectin, C-lectin domain [56456] (1 species)
   folowed by EGF-like module

   • Species Human (Homo sapiens) [TaxId:9606] [56457] (2 PDB entries)

7. EBV gp42 [75583] (1 species)

   • Species Epstein-Barr virus [TaxId:10376] [75584] (1 PDB entry)

8. Eosinophil major basic protein [64457] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [64458] (2 PDB entries)

9. Galactose-specific C-type lectin [90061] (1 species)

   • Species Western diamondback rattlesnake (Crotalus atrox) [TaxId:8730] [90062] (2 PDB entries)

10. H1 subunit of the asialoglycoprotein receptor [56454] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [56455] (1 PDB entry)

11. Hypothetical protein F28B4.3 [118166] (1 species)

    • Species Nematode (Caenorhabditis elegans) [TaxId:6239] [118167] (1 PDB entry)
      Uniprot Q19853 1193-1329

12. Lectin CEL-I [111262] (1 species)

    • Species Cucumaria echinata [TaxId:40245] [111263] (2 PDB entries)
      Uniprot Q7M462

13. Lectin TC14 [56463] (1 species)

    • Species Tunicate (Polyandrocarpa misakiensis) [TaxId:7723] [56464] (2 PDB entries)

14. Lithostathine, inhibitor of stone formation [56438] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [56439] (2 PDB entries)

15. Low affinity immunoglobulin epsilon Fc receptor [143957] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [143958] (12 PDB entries)
      Uniprot P06734 156-298

16. Macrophage mannose receptor, CRD4 [56444] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [56445] (2 PDB entries)

17. Mannose-binding protein A, C-lectin domain [56458] (2 species)

    1. Species Human (Homo sapiens) [TaxId:9606] [56459] (1 PDB entry)

    2. Species Norway rat (Rattus norvegicus) [TaxId:10116] [56460] (38 PDB entries)

18. NK cell receptor [56452] (3 species)

    1. Species Mouse (Mus musculus), ly49-a [TaxId:10090] [56453] (1 PDB entry)

    2. Species Mouse (Mus musculus), ly49-c [TaxId:10090] [103351] (2 PDB entries)

    3. Species Mouse (Mus musculus), ly49-i [TaxId:10090] [75582] (1 PDB entry)

19. NK cell-activating receptor nkg2d [64453] (2 species)

    1. Species Human (Homo sapiens) [TaxId:9606] [64455] (3 PDB entries)

    2. Species Mouse (Mus musculus) [TaxId:10090] [64454] (2 PDB entries)

20. Ovocleidin-17 [90059] (1 species)
    major protein of the eggshell calcified layer

    • Species Chicken (Gallus gallus) [TaxId:9031] [90060] (1 PDB entry)

21. Oxidised low density lipoprotein [143955] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [143956] (1 PDB entry)
      Uniprot P78380 140-270

22. P-selectin, C-lectin domain [116731] (1 species)
    followed by EGF-like module

    • Species Human (Homo sapiens) [TaxId:9606] [116732] (3 PDB entries)

23. Pancreatitis-associated protein 1 [103341] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [103342] (1 PDB entry)

24. Snake coagglutinin alpha chain [88861] (10 species)
    heterodimeric coagulation factors IX/X-binding protein (IX/X-BP)

    1. Species Habu snake (Trimeresurus flavoviridis) [TaxId:88087] [88862] (6 PDB entries)

    2. Species Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId:88087] [88863] (1 PDB entry)

    3. Species Hundred-pace snake (Deinagkistrodon acutus), different isoforms [TaxId:36307] [88865] (3 PDB entries)

    4. Species Jararaca (Bothrops jararaca), botrocetin [TaxId:8724] [88864] (4 PDB entries)

    5. Species Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId:8717] [143953] (1 PDB entry)
       Uniprot P81397 1-132

    6. Species Puff adder (Bitis arietans), bitiscetin [TaxId:8692] [88866] (2 PDB entries)

    7. Species Saw-scaled viper (Echis carinatus), echicetin [TaxId:40353] [103346] (1 PDB entry)

    8. Species Snake (Echis multisquamatus), Ems16 [TaxId:93050] [103343] (2 PDB entries)
       Uniprot Q7T2Q1 24-157

    9. Species South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId:8732] [103344] (2 PDB entries)

    10. Species Taiwan habu (Trimeresurus mucrosquamatus), mucrocetin [TaxId:103944] [103345] (1 PDB entry)

25. Snake coagglutinin beta chain [88867] (10 species)
    heterodimeric coagulation factors IX/X-binding protein (IX/X-BP)

    1. Species Habu snake (Trimeresurus flavoviridis) [TaxId:88087] [88868] (6 PDB entries)

    2. Species Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId:88087] [88869] (1 PDB entry)

    3. Species Jararaca (Bothrops jararaca), botrocetin [TaxId:8724] [88870] (4 PDB entries)

    4. Species Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId:8717] [143954] (1 PDB entry)
       Uniprot P81398 2-128

    5. Species Puff adder (Bitis arietans), bitiscetin [TaxId:8692] [88872] (2 PDB entries)

    6. Species Saw-scaled viper (Echis carinatus), echicetin [TaxId:40353] [103350] (1 PDB entry)

    7. Species Sharp-nosed viper (Deinagkistrodon acutus) [TaxId:36307] [88871] (3 PDB entries)

    8. Species Snake (Echis multisquamatus), Ems16 [TaxId:93050] [103347] (2 PDB entries)
       Uniprot Q7T2Q0 27-153

    9. Species South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId:8732] [103348] (2 PDB entries)

    10. Species Taiwan habu (Trimeresurus mucrosquamatus), mucrocetin [TaxId:103944] [103349] (1 PDB entry)

26. Surfactant protein, lectin domain [56461] (3 species)

    1. Species Human (Homo sapiens), SP-D [TaxId:9606] [56462] (9 PDB entries)

    2. Species Norway rat (Rattus norvegicus), SP-A [TaxId:10116] [103352] (6 PDB entries)

    3. Species Pig (Sus scrofa) [TaxId:9823] [226409] (1 PDB entry)

27. Tetranectin [56465] (1 species)
    trimeric plasminogen binding protein with an alpha-helical coiled coil

    • Species Human (Homo sapiens) [TaxId:9606] [56466] (3 PDB entries)
      Uniprot P05452 85-202

28. Type II antifreeze protein [56450] (1 species)

    • Species Sea raven (Hemitripterus americanus) [TaxId:8094] [56451] (1 PDB entry)

29. automated matches [190329] (8 species)
    not a true protein

    1. Species Agkistrodon rhodostoma [TaxId:8717] [188575] (1 PDB entry)

    2. Species Brachyopsis rostratus [TaxId:412977] [188571] (1 PDB entry)

    3. Species Cucumaria echinata [TaxId:40245] [271988] (1 PDB entry)

    4. Species Human (Homo sapiens) [TaxId:9606] [187151] (9 PDB entries)

    5. Species Human herpesvirus 4 (strain b95-8) [TaxId:10377] [255828] (1 PDB entry)

    6. Species Malayan pit viper (Calloselasma rhodostoma) [TaxId:8717] [188489] (2 PDB entries)

    7. Species Mouse (Mus musculus) [TaxId:10090] [187300] (3 PDB entries)

    8. Species Sharp-nosed viper (Deinagkistrodon acutus) [TaxId:36307] [195597] (1 PDB entry)

More info for Family d.169.1.1: C-type lectin domain

Timeline for Family d.169.1.1: C-type lectin domain:

• Family d.169.1.1: C-type lectin domain first appeared (with stable ids) in SCOP 1.55
  
• Family d.169.1.1: C-type lectin domain appears in SCOPe 2.04
  
• Family d.169.1.1: C-type lectin domain appears in SCOPe 2.06
  
• Family d.169.1.1: C-type lectin domain appears in the current release, SCOPe 2.08