Class d: Alpha and beta proteins (a+b) [53931] (396 folds) |
Fold d.167: Peptide deformylase [56419] (1 superfamily) alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix |
Superfamily d.167.1: Peptide deformylase [56420] (2 families) nickel-dependent enzyme |
Family d.167.1.1: Peptide deformylase [56421] (2 proteins) automatically mapped to Pfam PF01327 |
Protein Peptide deformylase [56422] (11 species) |
Species Escherichia coli [TaxId:562] [56423] (21 PDB entries) |
Domain d1bs4a_: 1bs4 A: [42287] complexed with 2pe, so4, zn |
Domain d1bs4b_: 1bs4 B: [42288] complexed with 2pe, so4, zn |
Domain d1bs4c_: 1bs4 C: [42289] complexed with 2pe, so4, zn |
Domain d1bs5a_: 1bs5 A: [42296] complexed with so4, zn |
Domain d1bs5b_: 1bs5 B: [42297] complexed with so4, zn |
Domain d1bs5c_: 1bs5 C: [42298] complexed with so4, zn |
Domain d1bs6a_: 1bs6 A: [42290] complexed with ni, so4 |
Domain d1bs6b_: 1bs6 B: [42291] complexed with ni, so4 |
Domain d1bs6c_: 1bs6 C: [42292] complexed with ni, so4 |
Domain d1bs7a_: 1bs7 A: [42299] complexed with ni, so4 |
Domain d1bs7b_: 1bs7 B: [42300] complexed with ni, so4 |
Domain d1bs7c_: 1bs7 C: [42301] complexed with ni, so4 |
Domain d1bs8a_: 1bs8 A: [42293] complexed with so4, zn |
Domain d1bs8b_: 1bs8 B: [42294] complexed with so4, zn |
Domain d1bs8c_: 1bs8 C: [42295] complexed with so4, zn |
Domain d1bsja_: 1bsj A: [42302] complexed with co, mln, po4 |
Domain d1bska_: 1bsk A: [42303] complexed with mln, po4, zn |
Domain d1bsza_: 1bsz A: [42281] complexed with 2pe, fe, so4 |
Domain d1bszb_: 1bsz B: [42282] complexed with 2pe, fe, so4 |
Domain d1bszc_: 1bsz C: [42283] complexed with 2pe, fe, so4 |
Domain d1defa_: 1def A: [42306] incorrect model(?) complexed with zn |
Domain d1dffa_: 1dff A: [42304] complexed with zn |
Domain d1g27a_: 1g27 A: [65106] complexed with bb1, ni |
Domain d1g27b_: 1g27 B: [65107] complexed with bb1, ni |
Domain d1g27c_: 1g27 C: [65108] complexed with bb1, ni |
Domain d1g2aa_: 1g2a A: [65109] complexed with bb2, ni |
Domain d1g2ab_: 1g2a B: [65110] complexed with bb2, ni |
Domain d1g2ac_: 1g2a C: [65111] complexed with bb2, ni |
Domain d1icja_: 1icj A: [42284] complexed with 2pe, ni, so4 |
Domain d1icjb_: 1icj B: [42285] complexed with 2pe, ni, so4 |
Domain d1icjc_: 1icj C: [42286] complexed with 2pe, ni, so4 |
Domain d1lrua_: 1lru A: [74228] complexed with antibiotic actinonin complexed with bb2, so4, zn |
Domain d1lrub_: 1lru B: [74229] complexed with antibiotic actinonin complexed with bb2, so4, zn |
Domain d1lruc_: 1lru C: [74230] complexed with antibiotic actinonin complexed with bb2, so4, zn |
Domain d1xema_: 1xem A: [121911] automated match to d1bs4a_ complexed with fmt, zn |
Domain d1xena_: 1xen A: [121912] automated match to d1bs4a_ complexed with fe, fmt |
Domain d1xeoa_: 1xeo A: [121913] automated match to d1bs4a_ complexed with co, fmt |
Domain d2ai8a_: 2ai8 A: [126819] automated match to d1bs4a_ complexed with ni, sb7 |
Domain d2ai8b_: 2ai8 B: [126820] automated match to d1bs4a_ complexed with ni, sb7 |
Domain d2ai8c_: 2ai8 C: [126821] automated match to d1bs4a_ complexed with ni, sb7 |
Domain d2defa_: 2def A: [42305] complexed with ni |
Domain d2kmna_: 2kmn A: [242567] automated match to d1defa_ complexed with bb2, zn |
Domain d3k6la_: 3k6l A: [179131] automated match to d1bs4a_ complexed with 2bb, ni |
Domain d3k6lb_: 3k6l B: [179132] automated match to d1bs4a_ complexed with 2bb, ni |
Domain d3k6lc_: 3k6l C: [179133] automated match to d1bs4a_ complexed with 2bb, ni |
Timeline for Species Escherichia coli [TaxId:562] from d.167.1.1 Peptide deformylase: