Lineage for Species: Escherichia coli [TaxId: 562]

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. Family d.167.1.1: Peptide deformylase [56421] (2 proteins)
    automatically mapped to Pfam PF01327
  6. Protein Peptide deformylase [56422] (11 species)
  7. Species Escherichia coli [TaxId:562] [56423] (21 PDB entries)

PDB entries in Species: Escherichia coli [TaxId: 562]:

  1. Domain(s) for 1bs4:
    1. Domain d1bs4a_: 1bs4 A: [42287]
      complexed with 2pe, so4, zn
    2. Domain d1bs4b_: 1bs4 B: [42288]
      complexed with 2pe, so4, zn
    3. Domain d1bs4c_: 1bs4 C: [42289]
      complexed with 2pe, so4, zn
  2. Domain(s) for 1bs5:
    1. Domain d1bs5a_: 1bs5 A: [42296]
      complexed with so4, zn
    2. Domain d1bs5b_: 1bs5 B: [42297]
      complexed with so4, zn
    3. Domain d1bs5c_: 1bs5 C: [42298]
      complexed with so4, zn
  3. Domain(s) for 1bs6:
    1. Domain d1bs6a_: 1bs6 A: [42290]
      complexed with ni, so4
    2. Domain d1bs6b_: 1bs6 B: [42291]
      complexed with ni, so4
    3. Domain d1bs6c_: 1bs6 C: [42292]
      complexed with ni, so4
  4. Domain(s) for 1bs7:
    1. Domain d1bs7a_: 1bs7 A: [42299]
      complexed with ni, so4
    2. Domain d1bs7b_: 1bs7 B: [42300]
      complexed with ni, so4
    3. Domain d1bs7c_: 1bs7 C: [42301]
      complexed with ni, so4
  5. Domain(s) for 1bs8:
    1. Domain d1bs8a_: 1bs8 A: [42293]
      complexed with so4, zn
    2. Domain d1bs8b_: 1bs8 B: [42294]
      complexed with so4, zn
    3. Domain d1bs8c_: 1bs8 C: [42295]
      complexed with so4, zn
  6. Domain(s) for 1bsj:
  7. Domain(s) for 1bsk:
  8. Domain(s) for 1bsz:
    1. Domain d1bsza_: 1bsz A: [42281]
      complexed with 2pe, fe, so4
    2. Domain d1bszb_: 1bsz B: [42282]
      complexed with 2pe, fe, so4
    3. Domain d1bszc_: 1bsz C: [42283]
      complexed with 2pe, fe, so4
  9. Domain(s) for 1def:
  10. Domain(s) for 1dff:
  11. Domain(s) for 1g27:
    1. Domain d1g27a_: 1g27 A: [65106]
      complexed with bb1, ni
    2. Domain d1g27b_: 1g27 B: [65107]
      complexed with bb1, ni
    3. Domain d1g27c_: 1g27 C: [65108]
      complexed with bb1, ni
  12. Domain(s) for 1g2a:
    1. Domain d1g2aa_: 1g2a A: [65109]
      complexed with bb2, ni
    2. Domain d1g2ab_: 1g2a B: [65110]
      complexed with bb2, ni
    3. Domain d1g2ac_: 1g2a C: [65111]
      complexed with bb2, ni
  13. Domain(s) for 1icj:
    1. Domain d1icja_: 1icj A: [42284]
      complexed with 2pe, ni, so4
    2. Domain d1icjb_: 1icj B: [42285]
      complexed with 2pe, ni, so4
    3. Domain d1icjc_: 1icj C: [42286]
      complexed with 2pe, ni, so4
  14. Domain(s) for 1lru:
    1. Domain d1lrua_: 1lru A: [74228]
      complexed with antibiotic actinonin
      complexed with bb2, so4, zn
    2. Domain d1lrub_: 1lru B: [74229]
      complexed with antibiotic actinonin
      complexed with bb2, so4, zn
    3. Domain d1lruc_: 1lru C: [74230]
      complexed with antibiotic actinonin
      complexed with bb2, so4, zn
  15. Domain(s) for 1xem:
  16. Domain(s) for 1xen:
  17. Domain(s) for 1xeo:
  18. Domain(s) for 2ai8:
    1. Domain d2ai8a_: 2ai8 A: [126819]
      automated match to d1bs4a_
      complexed with ni, sb7
    2. Domain d2ai8b_: 2ai8 B: [126820]
      automated match to d1bs4a_
      complexed with ni, sb7
    3. Domain d2ai8c_: 2ai8 C: [126821]
      automated match to d1bs4a_
      complexed with ni, sb7
  19. Domain(s) for 2def:
  20. Domain(s) for 2kmn:
  21. Domain(s) for 3k6l:
    1. Domain d3k6la_: 3k6l A: [179131]
      automated match to d1bs4a_
      complexed with 2bb, ni
    2. Domain d3k6lb_: 3k6l B: [179132]
      automated match to d1bs4a_
      complexed with 2bb, ni
    3. Domain d3k6lc_: 3k6l C: [179133]
      automated match to d1bs4a_
      complexed with 2bb, ni

More info for Species Escherichia coli [TaxId:562] from d.167.1.1 Peptide deformylase

Timeline for Species Escherichia coli [TaxId:562] from d.167.1.1 Peptide deformylase: