Lineage for Protein: Peptide deformylase

  1. Root: SCOP 1.63
  2. 251695Class d: Alpha and beta proteins (a+b) [53931] (224 folds)
  3. 264339Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 264340Superfamily d.167.1: Peptide deformylase [56420] (1 family) (S)
    nickel-dependent enzyme
  5. 264341Family d.167.1.1: Peptide deformylase [56421] (1 protein)
  6. 264342Protein Peptide deformylase [56422] (5 species)

Species:

  1. 264343Bacillus stearothermophilus [TaxId:1422] [75580] (1 PDB entry)
    • Domain for 1lqy:
      • 264344Domain d1lqya_: 1lqy A: [74212]
        complexed with antibiotic actinonin
        complexed with bb2, ni
  2. 264345Escherichia coli [TaxId:562] [56423] (15 PDB entries)
    1. Domains for 1bs4:
      1. 264349Domain d1bs4a_: 1bs4 A: [42287]
      2. 264350Domain d1bs4b_: 1bs4 B: [42288]
      3. 264351Domain d1bs4c_: 1bs4 C: [42289]
        complexed with 2pe, so4, zn3
    2. Domains for 1bs5:
      1. 264370Domain d1bs5a_: 1bs5 A: [42296]
      2. 264371Domain d1bs5b_: 1bs5 B: [42297]
      3. 264372Domain d1bs5c_: 1bs5 C: [42298]
        complexed with so4, zn3
    3. Domains for 1bs6:
      1. 264358Domain d1bs6a_: 1bs6 A: [42290]
      2. 264359Domain d1bs6b_: 1bs6 B: [42291]
      3. 264360Domain d1bs6c_: 1bs6 C: [42292]
        complexed with ni1, ni2, so4
    4. Domains for 1bs7:
      1. 264373Domain d1bs7a_: 1bs7 A: [42299]
      2. 264374Domain d1bs7b_: 1bs7 B: [42300]
      3. 264375Domain d1bs7c_: 1bs7 C: [42301]
        complexed with ni1, so4
    5. Domains for 1bs8:
      1. 264364Domain d1bs8a_: 1bs8 A: [42293]
      2. 264365Domain d1bs8b_: 1bs8 B: [42294]
      3. 264366Domain d1bs8c_: 1bs8 C: [42295]
        complexed with so4, zn3, zno
    6. Domain for 1bsj:
    7. Domain for 1bsk:
    8. Domains for 1bsz:
      1. 264352Domain d1bsza_: 1bsz A: [42281]
      2. 264353Domain d1bszb_: 1bsz B: [42282]
      3. 264354Domain d1bszc_: 1bsz C: [42283]
        complexed with 2pe, of1, so4
    9. Domain for 1def:
    10. Domain for 1dff:
    11. Domains for 1g27:
      1. 264361Domain d1g27a_: 1g27 A: [65106]
      2. 264362Domain d1g27b_: 1g27 B: [65107]
      3. 264363Domain d1g27c_: 1g27 C: [65108]
        complexed with bb1, ni
    12. Domains for 1g2a:
      1. 264346Domain d1g2aa_: 1g2a A: [65109]
      2. 264347Domain d1g2ab_: 1g2a B: [65110]
      3. 264348Domain d1g2ac_: 1g2a C: [65111]
        complexed with bb2, ni
    13. Domains for 1icj:
      1. 264355Domain d1icja_: 1icj A: [42284]
      2. 264356Domain d1icjb_: 1icj B: [42285]
      3. 264357Domain d1icjc_: 1icj C: [42286]
        complexed with ni, pgo, so4
    14. Domains for 1lru:
      1. 264367Domain d1lrua_: 1lru A: [74228]
      2. 264368Domain d1lrub_: 1lru B: [74229]
      3. 264369Domain d1lruc_: 1lru C: [74230]
        complexed with antibiotic actinonin
        complexed with bb2, so4, zn
    15. Domain for 2def:
  3. 264381Malaria parasite (Plasmodium falciparum) [TaxId:5833] [75581] (1 PDB entry)
  4. 264392Pseudomonas aeruginosa [TaxId:287] [75578] (1 PDB entry)
    • Domain for 1lry:
      • 264393Domain d1lrya_: 1lry A: [74231]
        complexed with antibiotic actinonin
        complexed with bb2, zn
  5. 264394Sthaphylococcus aureus [75579] (2 PDB entries)
    1. Domain for 1lmh:
    2. Domains for 1lqw:
      1. 264396Domain d1lqwa_: 1lqw A: [74210]
      2. 264397Domain d1lqwb_: 1lqw B: [74211]
        complexed with zn

More info for Protein Peptide deformylase from d.167.1.1: Peptide deformylase

Timeline for Protein Peptide deformylase from d.167.1.1: Peptide deformylase: