SCOPe 2.05: Protein: HslV (ClpQ) protease

Lineage for Protein: HslV (ClpQ) protease

Root: SCOPe 2.05
Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families)
N-terminal residue provides two catalytic groups, nucleophile and proton donor
Family d.153.1.4: Proteasome subunits [56251] (4 proteins)
Protein HslV (ClpQ) protease [56258] (4 species)
dodecameric prokaryotic homologue of proteasome

Species:

Bacillus subtilis [TaxId:1423] [160845] (2 PDB entries)
Uniprot P39070 2-181
1. Domains for 1yyf:
  1. Domain d1yyfc1: 1yyf C:2-181 [144719]
    Other proteins in same PDB: d1yyfa1, d1yyfb1
    complexed with adp
  2. Domain d1yyfd1: 1yyf D:2-181 [144720]
    Other proteins in same PDB: d1yyfa1, d1yyfb1
    automatically matched to 1YYF C:2-181
    complexed with adp
2. Domains for 2z3a:
  1. Domain d2z3aa_: 2z3a A: [153959]
    automated match to d2z3aa1
  2. Domain d2z3ab_: 2z3a B: [153960]
    automated match to d2z3ab1
  3. Domain d2z3ac_: 2z3a C: [153961]
    automated match to d2z3aa1
  4. Domain d2z3ad_: 2z3a D: [153962]
    automated match to d2z3ad1
  5. Domain d2z3ae_: 2z3a E: [153963]
    automated match to d2z3ad1
  6. Domain d2z3af_: 2z3a F: [153964]
    automated match to d2z3af1
  7. Domain d2z3ag_: 2z3a G: [153965]
    automated match to d2z3af1
  8. Domain d2z3ah_: 2z3a H: [153966]
    automated match to d2z3ad1
  9. Domain d2z3ai_: 2z3a I: [153967]
    automated match to d2z3af1
  10. Domain d2z3aj_: 2z3a J: [153968]
    automated match to d2z3aj1
  11. Domain d2z3ak_: 2z3a K: [153969]
    automated match to d2z3aj1
  12. Domain d2z3al_: 2z3a L: [153970]
    automated match to d2z3aj1
Escherichia coli [TaxId:562] [56259] (8 PDB entries)
1. Domains for 1e94:
  1. Domain d1e94a_: 1e94 A: [41977]
    Other proteins in same PDB: d1e94e_, d1e94f_
    complexed with anp
  2. Domain d1e94b_: 1e94 B: [41978]
    Other proteins in same PDB: d1e94e_, d1e94f_
    complexed with anp
  3. Domain d1e94c_: 1e94 C: [41979]
    Other proteins in same PDB: d1e94e_, d1e94f_
    complexed with anp
  4. Domain d1e94d_: 1e94 D: [41980]
    Other proteins in same PDB: d1e94e_, d1e94f_
    complexed with anp
2. Domains for 1g4a:
  1. Domain d1g4aa_: 1g4a A: [41981]
    Other proteins in same PDB: d1g4ae_, d1g4af_
    complexed with dat
  2. Domain d1g4ab_: 1g4a B: [41982]
    Other proteins in same PDB: d1g4ae_, d1g4af_
    complexed with dat
  3. Domain d1g4ac_: 1g4a C: [41983]
    Other proteins in same PDB: d1g4ae_, d1g4af_
    complexed with dat
  4. Domain d1g4ad_: 1g4a D: [41984]
    Other proteins in same PDB: d1g4ae_, d1g4af_
    complexed with dat
3. Domains for 1g4b:
  1. Domain d1g4bm_: 1g4b M: [41985]
    Other proteins in same PDB: d1g4be_, d1g4bf_, d1g4bk_, d1g4bl_
  2. Domain d1g4bn_: 1g4b N: [41986]
    Other proteins in same PDB: d1g4be_, d1g4bf_, d1g4bk_, d1g4bl_
  3. Domain d1g4bo_: 1g4b O: [41987]
    Other proteins in same PDB: d1g4be_, d1g4bf_, d1g4bk_, d1g4bl_
  4. Domain d1g4bp_: 1g4b P: [41988]
    Other proteins in same PDB: d1g4be_, d1g4bf_, d1g4bk_, d1g4bl_
4. Domains for 1hqy:
  1. Domain d1hqya_: 1hqy A: [65909]
    Other proteins in same PDB: d1hqye_, d1hqyf_
    complexed with adp
  2. Domain d1hqyb_: 1hqy B: [65910]
    Other proteins in same PDB: d1hqye_, d1hqyf_
    complexed with adp
  3. Domain d1hqyc_: 1hqy C: [65911]
    Other proteins in same PDB: d1hqye_, d1hqyf_
    complexed with adp
  4. Domain d1hqyd_: 1hqy D: [65912]
    Other proteins in same PDB: d1hqye_, d1hqyf_
    complexed with adp
5. Domains for 1ht1:
  1. Domain d1ht1a_: 1ht1 A: [65924]
    Other proteins in same PDB: d1ht1e_, d1ht1f_, d1ht1g_, d1ht1i_
    complexed with adp
  2. Domain d1ht1b_: 1ht1 B: [65925]
    Other proteins in same PDB: d1ht1e_, d1ht1f_, d1ht1g_, d1ht1i_
    complexed with adp
  3. Domain d1ht1c_: 1ht1 C: [65926]
    Other proteins in same PDB: d1ht1e_, d1ht1f_, d1ht1g_, d1ht1i_
    complexed with adp
  4. Domain d1ht1d_: 1ht1 D: [65927]
    Other proteins in same PDB: d1ht1e_, d1ht1f_, d1ht1g_, d1ht1i_
    complexed with adp
  5. Domain d1ht1v_: 1ht1 V: [65932]
    Other proteins in same PDB: d1ht1e_, d1ht1f_, d1ht1g_, d1ht1i_
    complexed with adp
  6. Domain d1ht1x_: 1ht1 X: [65933]
    Other proteins in same PDB: d1ht1e_, d1ht1f_, d1ht1g_, d1ht1i_
    complexed with adp
  7. Domain d1ht1y_: 1ht1 Y: [65934]
    Other proteins in same PDB: d1ht1e_, d1ht1f_, d1ht1g_, d1ht1i_
    complexed with adp
  8. Domain d1ht1z_: 1ht1 Z: [65935]
    Other proteins in same PDB: d1ht1e_, d1ht1f_, d1ht1g_, d1ht1i_
    complexed with adp
6. Domains for 1ht2:
  1. Domain d1ht2a_: 1ht2 A: [65936]
    Other proteins in same PDB: d1ht2e_, d1ht2f_, d1ht2g_, d1ht2h_
    complexed with adp
  2. Domain d1ht2b_: 1ht2 B: [65937]
    Other proteins in same PDB: d1ht2e_, d1ht2f_, d1ht2g_, d1ht2h_
    complexed with adp
  3. Domain d1ht2c_: 1ht2 C: [65938]
    Other proteins in same PDB: d1ht2e_, d1ht2f_, d1ht2g_, d1ht2h_
    complexed with adp
  4. Domain d1ht2d_: 1ht2 D: [65939]
    Other proteins in same PDB: d1ht2e_, d1ht2f_, d1ht2g_, d1ht2h_
    complexed with adp
  5. Domain d1ht2i_: 1ht2 I: [65944]
    Other proteins in same PDB: d1ht2e_, d1ht2f_, d1ht2g_, d1ht2h_
    complexed with adp
  6. Domain d1ht2j_: 1ht2 J: [65945]
    Other proteins in same PDB: d1ht2e_, d1ht2f_, d1ht2g_, d1ht2h_
    complexed with adp
  7. Domain d1ht2k_: 1ht2 K: [65946]
    Other proteins in same PDB: d1ht2e_, d1ht2f_, d1ht2g_, d1ht2h_
    complexed with adp
  8. Domain d1ht2l_: 1ht2 L: [65947]
    Other proteins in same PDB: d1ht2e_, d1ht2f_, d1ht2g_, d1ht2h_
    complexed with adp
7. Domains for 1ned:
  1. Domain d1neda_: 1ned A: [41974]
  2. Domain d1nedb_: 1ned B: [41975]
  3. Domain d1nedc_: 1ned C: [41976]
8. Domains for 4g4e:
  1. Domain d4g4ea_: 4g4e A: [202173]
    automated match to d4g4ee_
    mutant
  2. Domain d4g4eb_: 4g4e B: [202174]
    automated match to d4g4ee_
    mutant
  3. Domain d4g4ec_: 4g4e C: [197309]
    automated match to d1e94a_
    mutant
  4. Domain d4g4ed_: 4g4e D: [202175]
    automated match to d4g4ee_
    mutant
  5. Domain d4g4ee_: 4g4e E: [197308]
    automated match to d1e94a_
    mutant
  6. Domain d4g4ef_: 4g4e F: [202176]
    automated match to d4g4ee_
    mutant
  7. Domain d4g4eg_: 4g4e G: [202177]
    automated match to d4g4ee_
    mutant
  8. Domain d4g4eh_: 4g4e H: [202178]
    automated match to d4g4ee_
    mutant
  9. Domain d4g4ei_: 4g4e I: [202179]
    automated match to d4g4ee_
    mutant
  10. Domain d4g4ej_: 4g4e J: [202180]
    automated match to d4g4ee_
    mutant
  11. Domain d4g4ek_: 4g4e K: [202181]
    automated match to d4g4ee_
    mutant
  12. Domain d4g4el_: 4g4e L: [202182]
    automated match to d4g4ee_
    mutant
Haemophilus influenzae [TaxId:727] [56260] (6 PDB entries)
1. Domains for 1g3i:
  1. Domain d1g3ig_: 1g3i G: [41992]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  2. Domain d1g3ih_: 1g3i H: [41993]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  3. Domain d1g3ii_: 1g3i I: [41994]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  4. Domain d1g3ij_: 1g3i J: [41995]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  5. Domain d1g3ik_: 1g3i K: [41996]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  6. Domain d1g3il_: 1g3i L: [41997]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  7. Domain d1g3im_: 1g3i M: [41998]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  8. Domain d1g3in_: 1g3i N: [41999]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  9. Domain d1g3io_: 1g3i O: [42000]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  10. Domain d1g3ip_: 1g3i P: [42001]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  11. Domain d1g3iq_: 1g3i Q: [42002]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
  12. Domain d1g3ir_: 1g3i R: [42003]
    Other proteins in same PDB: d1g3ia_, d1g3ib_, d1g3ic_, d1g3id_, d1g3ie_, d1g3if_, d1g3is_, d1g3it_, d1g3iu_, d1g3iv_, d1g3iw_, d1g3ix_
    complexed with atp
2. Domains for 1g3k:
  1. Domain d1g3ka_: 1g3k A: [41989]
    complexed with na
  2. Domain d1g3kb_: 1g3k B: [41990]
    complexed with na
  3. Domain d1g3kc_: 1g3k C: [41991]
    complexed with na
3. Domains for 1jjw:
  1. Domain d1jjwa_: 1jjw A: [66781]
    complexed with k
  2. Domain d1jjwb_: 1jjw B: [66782]
    complexed with k
  3. Domain d1jjwc_: 1jjw C: [66783]
    complexed with k
4. Domains for 1kyi:
  1. Domain d1kyig_: 1kyi G: [73229]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  2. Domain d1kyih_: 1kyi H: [73230]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  3. Domain d1kyii_: 1kyi I: [73231]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  4. Domain d1kyij_: 1kyi J: [73232]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  5. Domain d1kyik_: 1kyi K: [73233]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  6. Domain d1kyil_: 1kyi L: [73234]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  7. Domain d1kyim_: 1kyi M: [73235]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  8. Domain d1kyin_: 1kyi N: [73236]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  9. Domain d1kyio_: 1kyi O: [73237]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  10. Domain d1kyip_: 1kyi P: [73238]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  11. Domain d1kyiq_: 1kyi Q: [73239]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
  12. Domain d1kyir_: 1kyi R: [73240]
    Other proteins in same PDB: d1kyia_, d1kyib_, d1kyic_, d1kyid_, d1kyie_, d1kyif_, d1kyis_, d1kyit_, d1kyiu_, d1kyiv_, d1kyiw_, d1kyix_
    complexed with atp, lvs
5. Domains for 1ofh:
  1. Domain d1ofhg_: 1ofh G: [86951]
    Other proteins in same PDB: d1ofha_, d1ofhb_, d1ofhc_
    complexed with adp, mg, po4
  2. Domain d1ofhh_: 1ofh H: [86952]
    Other proteins in same PDB: d1ofha_, d1ofhb_, d1ofhc_
    complexed with adp, mg, po4
  3. Domain d1ofhi_: 1ofh I: [86953]
    Other proteins in same PDB: d1ofha_, d1ofhb_, d1ofhc_
    complexed with adp, mg, po4
  4. Domain d1ofhl_: 1ofh L: [86954]
    Other proteins in same PDB: d1ofha_, d1ofhb_, d1ofhc_
    complexed with adp, mg, po4
  5. Domain d1ofhm_: 1ofh M: [86955]
    Other proteins in same PDB: d1ofha_, d1ofhb_, d1ofhc_
    complexed with adp, mg, po4
  6. Domain d1ofhn_: 1ofh N: [86956]
    Other proteins in same PDB: d1ofha_, d1ofhb_, d1ofhc_
    complexed with adp, mg, po4
6. Domains for 1ofi:
  1. Domain d1ofig_: 1ofi G: [86960]
    Other proteins in same PDB: d1ofia_, d1ofib_, d1ofic_
    complexed with adp, lvs, mg, po4
  2. Domain d1ofih_: 1ofi H: [86961]
    Other proteins in same PDB: d1ofia_, d1ofib_, d1ofic_
    complexed with adp, lvs, mg, po4
  3. Domain d1ofii_: 1ofi I: [86962]
    Other proteins in same PDB: d1ofia_, d1ofib_, d1ofic_
    complexed with adp, lvs, mg, po4
  4. Domain d1ofil_: 1ofi L: [86963]
    Other proteins in same PDB: d1ofia_, d1ofib_, d1ofic_
    complexed with adp, lvs, mg, po4
  5. Domain d1ofim_: 1ofi M: [86964]
    Other proteins in same PDB: d1ofia_, d1ofib_, d1ofic_
    complexed with adp, lvs, mg, po4
  6. Domain d1ofin_: 1ofi N: [86965]
    Other proteins in same PDB: d1ofia_, d1ofib_, d1ofic_
    complexed with adp, lvs, mg, po4
Thermotoga maritima [TaxId:2336] [90045] (1 PDB entry)
- Domains for 1m4y:
  1. Domain d1m4ya_: 1m4y A: [84802]
    complexed with na
  2. Domain d1m4yb_: 1m4y B: [84803]
    complexed with na
  3. Domain d1m4yc_: 1m4y C: [84804]
    complexed with na

More info for Protein HslV (ClpQ) protease from d.153.1.4: Proteasome subunits

Timeline for Protein HslV (ClpQ) protease from d.153.1.4: Proteasome subunits:

Protein HslV (ClpQ) protease from d.153.1.4: Proteasome subunits first appeared (with stable ids) in SCOP 1.55
Protein HslV (ClpQ) protease from d.153.1.4: Proteasome subunits appears in SCOPe 2.04
Protein HslV (ClpQ) protease from d.153.1.4: Proteasome subunits appears in SCOPe 2.06
Protein HslV (ClpQ) protease from d.153.1.4: Proteasome subunits appears in the current release, SCOPe 2.08