Lineage for Family d.153.1.4: Proteasome subunits

  1. Root: SCOPe 2.01
  2. 1013083Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1044569Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 1044570Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 1044729Family d.153.1.4: Proteasome subunits [56251] (4 proteins)

Proteins:

  1. 1044730HslV (ClpQ) protease [56258] (4 species)
    dodecameric prokaryotic homologue of proteasome
    1. 1044731Species Bacillus subtilis [TaxId:1423] [160845] (2 PDB entries)
      Uniprot P39070 2-181
    2. 1044746Species Escherichia coli [TaxId:562] [56259] (7 PDB entries)
    3. 1044782Species Haemophilus influenzae [TaxId:727] [56260] (6 PDB entries)
    4. 1044825Species Thermotoga maritima [TaxId:2336] [90045] (1 PDB entry)
  2. 1044829Proteasome alpha subunit (non-catalytic) [56255] (5 species)
    contains an extension to the common fold at the N-terminus
    1. 1044830Species Archaeoglobus fulgidus [TaxId:2234] [90044] (2 PDB entries)
    2. 1044845Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56257] (28 PDB entries)
      The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
    3. 1045128Species Cow (Bos taurus) [TaxId:9913] [75568] (1 PDB entry)
    4. 1045143Species Rhodococcus erythropolis [TaxId:1833] [103314] (3 PDB entries)
    5. 1045165Species Thermoplasma acidophilum [TaxId:2303] [56256] (3 PDB entries)
  3. 1045208Proteasome beta subunit (catalytic) [56252] (5 species)
    1. 1045209Species Archaeoglobus fulgidus [TaxId:2234] [90043] (1 PDB entry)
    2. 1045217Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56254] (28 PDB entries)
      The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
    3. 1045556Species Cow (Bos taurus) [TaxId:9913] [75567] (1 PDB entry)
    4. 1045571Species Rhodococcus erythropolis [TaxId:1833] [103313] (3 PDB entries)
    5. 1045593Species Thermoplasma acidophilum [TaxId:2303] [56253] (5 PDB entries)
  4. 1045650automated matches [190144] (6 species)
    not a true protein
    1. 1045651Species Bacillus anthracis [TaxId:198094] [189742] (1 PDB entry)
    2. 1045658Species Bacillus subtilis [TaxId:1423] [187296] (1 PDB entry)
    3. 1045671Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187078] (20 PDB entries)
    4. 1045758Species Mycobacterium tuberculosis [TaxId:1773] [187707] (9 PDB entries)
    5. 1045999Species Saccharomyces cerevisiae [TaxId:559292] [189752] (2 PDB entries)
    6. 1046004Species Thermoplasma acidophilum [TaxId:2303] [186869] (5 PDB entries)

More info for Family d.153.1.4: Proteasome subunits

Timeline for Family d.153.1.4: Proteasome subunits: