Class d: Alpha and beta proteins (a+b) [53931] (388 folds) |
Fold d.142: ATP-grasp [56058] (2 superfamilies) Consists of two subdomains with different alpha+beta folds shares functional and structural similarities with the PIPK and protein kinase superfamilies |
Superfamily d.142.2: DNA ligase/mRNA capping enzyme, catalytic domain [56091] (6 families) has a circularly permuted topology |
Family d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase [56096] (2 proteins) automatically mapped to Pfam PF01653 |
Protein Adenylation domain of NAD+-dependent DNA ligase [56097] (4 species) contains additional, N-terminal all-alpha subdomain |
Bacillus stearothermophilus [TaxId:1422] [56098] (1 PDB entry) |
Domain d1b04a_: 1b04 A: [41579] |
Domain d1b04b_: 1b04 B: [41580] |
Enterococcus faecalis [TaxId:1351] [118124] (9 PDB entries) Uniprot Q837V6 5-317 |
Domain d1ta8a_: 1ta8 A: [112375] complexed with gol, nmn, so4 |
Domain d1taea_: 1tae A: [112376] complexed with na, nad, so4 |
Domain d1taeb_: 1tae B: [112377] complexed with na, nad, so4 |
Domain d1taec_: 1tae C: [112378] complexed with na, nad, so4 |
Domain d1taed_: 1tae D: [112379] complexed with na, nad, so4 |
Domain d3ba8a_: 3ba8 A: [172514] automated match to d1taea_ complexed with 3b8, nmn, so4 |
Domain d3ba9a_: 3ba9 A: [172515] automated match to d1taea_ complexed with 3b9, gol, nmn, so4 |
Domain d3baaa_: 3baa A: [172516] automated match to d1taea_ complexed with 3ba, gol, nmn, so4 |
Domain d3baba_: 3bab A: [172517] automated match to d1taea_ complexed with 3bd, gol, nmn, so4 |
Domain d4eeqa_: 4eeq A: [220460] automated match to d4efea_ protein/DNA complex; complexed with 0ox, nmn, so4 |
Domain d4lh6a_: 4lh6 A: [235886] automated match to d4lh7a_ complexed with 1x7, act, na, nmn |
Domain d4lh7a_: 4lh7 A: [230118] automated match to d1taea_ complexed with 1x8, na, nmn |
Staphylococcus aureus [TaxId:1280] [189155] (2 PDB entries) |
Domain d3jsla_: 3jsl A: [178787] automated match to d1b04a_ complexed with so4 |
Domain d3jslb_: 3jsl B: [178788] automated match to d1b04a_ complexed with so4 |
Domain d3jsna_: 3jsn A: [178789] automated match to d1b04a_ |
Thermus filiformis [TaxId:276] [56099] (3 PDB entries) |
Domain d1dgsa3: 1dgs A:1-314 [41581] Other proteins in same PDB: d1dgsa1, d1dgsa2, d1dgsb1, d1dgsb2 protein/DNA complex; complexed with amp, zn |
Domain d1dgsb3: 1dgs B:2001-2314 [41582] Other proteins in same PDB: d1dgsa1, d1dgsa2, d1dgsb1, d1dgsb2 protein/DNA complex; complexed with amp, zn |
Domain d1dgta4: 1dgt A:1-314 [302332] Other proteins in same PDB: d1dgta5, d1dgta6 automated match to d1dgsa3 protein/DNA complex; complexed with amp, zn |
Domain d1v9pa3: 1v9p A:1-317 [100546] Other proteins in same PDB: d1v9pa1, d1v9pa2, d1v9pb1, d1v9pb2 complexed with amp, zn |
Domain d1v9pb3: 1v9p B:2001-2317 [100549] Other proteins in same PDB: d1v9pa1, d1v9pa2, d1v9pb1, d1v9pb2 complexed with amp, zn |
Timeline for Protein Adenylation domain of NAD+-dependent DNA ligase from d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase: