SCOPe 2.07: Protein: Proliferating cell nuclear antigen (PCNA)

Lineage for Protein: Proliferating cell nuclear antigen (PCNA)

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.131: DNA clamp [55978] (1 superfamily)
contains two helices and two beta sheets
duplication: fold has internal pseudo two-fold symmetry
Superfamily d.131.1: DNA clamp [55979] (3 families)
Family d.131.1.2: DNA polymerase processivity factor [55983] (5 proteins)
duplication: consists of two domains of this fold
Protein Proliferating cell nuclear antigen (PCNA) [55989] (8 species)

Species:

Archaeoglobus fulgidus [TaxId:2234] [103254] (3 PDB entries)
1. Domains for 1rwz:
  1. Domain d1rwza1: 1rwz A:1-122 [98005]
  2. Domain d1rwza2: 1rwz A:123-244 [98006]
2. Domains for 1rxm:
  1. Domain d1rxma1: 1rxm A:1-122 [98035]
    complexed with a FEN-1 peptide, chain B
  2. Domain d1rxma2: 1rxm A:123-245 [98036]
    complexed with a FEN-1 peptide, chain B
3. Domains for 1rxz:
  1. Domain d1rxza1: 1rxz A:1-122 [98067]
    complexed with a FEN-1 peptide, chain B
    protein/DNA complex
  2. Domain d1rxza2: 1rxz A:123-245 [98068]
    complexed with a FEN-1 peptide, chain B
    protein/DNA complex

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55990] (8 PDB entries)
Uniprot P15873

Domains for 1plq:
1. Domain d1plqa1: 1plq A:1-126 [41388]
  CASP1
  complexed with hg
2. Domain d1plqa2: 1plq A:127-258 [41389]
  CASP1
  complexed with hg
Domains for 1plr:
1. Domain d1plra1: 1plr A:1-126 [41390]
2. Domain d1plra2: 1plr A:127-258 [41391]

Domains for 1sxj:

Domain d1sxjf1: 1sxj F:1-126 [106091]
Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2, d1sxjf3, d1sxjg3, d1sxjh3
complexed with adp, ags, mg

Domain d1sxjf2: 1sxj F:127-256 [106092]
Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2, d1sxjf3, d1sxjg3, d1sxjh3
complexed with adp, ags, mg

Domain d1sxjg1: 1sxj G:1-126 [106093]
Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2, d1sxjf3, d1sxjg3, d1sxjh3
complexed with adp, ags, mg

Domain d1sxjg2: 1sxj G:127-255 [106094]
Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2, d1sxjf3, d1sxjg3, d1sxjh3
complexed with adp, ags, mg

Domain d1sxjh1: 1sxj H:1-126 [106095]
Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2, d1sxjf3, d1sxjg3, d1sxjh3
complexed with adp, ags, mg

Domain d1sxjh2: 1sxj H:127-254 [106096]
Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2, d1sxjf3, d1sxjg3, d1sxjh3
complexed with adp, ags, mg

Domains for 2od8:
1. Domain d2od8a1: 2od8 A:1-126 [139024]
  automatically matched to d1plq_1
2. Domain d2od8a2: 2od8 A:127-255 [139025]
  automatically matched to d1plq_2
Domains for 3f1w:
1. Domain d3f1wa1: 3f1w A:1-126 [232134]
  automated match to d1plqa1
  mutant
2. Domain d3f1wa2: 3f1w A:127-254 [232135]
  automated match to d1plqa2
  mutant
Domains for 3k4x:
1. Domain d3k4xa1: 3k4x A:2-126 [247107]
  automated match to d1plqa1
  protein/DNA complex
2. Domain d3k4xa2: 3k4x A:127-253 [247108]
  automated match to d1plqa2
  protein/DNA complex
3. Domain d3k4xa3: 3k4x A:269-393 [247109]
  automated match to d1plqa1
  protein/DNA complex
4. Domain d3k4xa4: 3k4x A:394-522 [247110]
  automated match to d1plqa2
  protein/DNA complex
5. Domain d3k4xa5: 3k4x A:536-660 [247111]
  automated match to d1plqa1
  protein/DNA complex
6. Domain d3k4xa6: 3k4x A:661-787 [247112]
  automated match to d1plqa2
  protein/DNA complex
Domains for 6w9w:
1. Domain d6w9wa1: 6w9w A:1-126 [392964]
  Other proteins in same PDB: d6w9wa3
  automated match to d1plqa1
  mutant
2. Domain d6w9wa2: 6w9w A:127-254 [392965]
  Other proteins in same PDB: d6w9wa3
  automated match to d1plqa2
  mutant
Domains for 6wac:
1. Domain d6waca1: 6wac A:1-126 [392941]
  automated match to d1plqa1
  mutant
2. Domain d6waca2: 6wac A:127-253 [392942]
  automated match to d1plqa2
  mutant

Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [270905] (11 PDB entries)
1. Domains for 4yhr:
  1. Domain d4yhra1: 4yhr A:1-126 [270906]
    automated match to d1plqa1
  2. Domain d4yhra2: 4yhr A:127-256 [270907]
    automated match to d1plqa2
2. Domains for 5jne:
  1. Domain d5jned1: 5jne D:1-126 [321089]
    Other proteins in same PDB: d5jneb1, d5jneb2, d5jnec_, d5jnef_, d5jneg_
    automated match to d1plqa1
    complexed with 6ln, gol, zn
  2. Domain d5jned2: 5jne D:127-254 [321090]
    Other proteins in same PDB: d5jneb1, d5jneb2, d5jnec_, d5jnef_, d5jneg_
    automated match to d1plqa2
    complexed with 6ln, gol, zn
  3. Domain d5jneh1: 5jne H:1-126 [321085]
    Other proteins in same PDB: d5jneb1, d5jneb2, d5jnec_, d5jnef_, d5jneg_
    automated match to d1plqa1
    complexed with 6ln, gol, zn
  4. Domain d5jneh2: 5jne H:127-256 [321086]
    Other proteins in same PDB: d5jneb1, d5jneb2, d5jnec_, d5jnef_, d5jneg_
    automated match to d1plqa2
    complexed with 6ln, gol, zn
3. Domains for 5v7k:
  1. Domain d5v7ka1: 5v7k A:1-126 [347867]
    automated match to d1plqa1
    mutant
  2. Domain d5v7ka2: 5v7k A:127-255 [347868]
    automated match to d1plqa2
    mutant
4. Domains for 5v7m:
  1. Domain d5v7ma1: 5v7m A:1-126 [347851]
    Other proteins in same PDB: d5v7ma3
    automated match to d1plqa1
    complexed with mg; mutant
  2. Domain d5v7ma2: 5v7m A:127-254 [347852]
    Other proteins in same PDB: d5v7ma3
    automated match to d1plqa2
    complexed with mg; mutant
5. Domains for 5zut:
  1. Domain d5zuta1: 5zut A:1-126 [353086]
    automated match to d1plqa1
  2. Domain d5zuta2: 5zut A:127-255 [353087]
    automated match to d1plqa2
6. Domains for 6cx2:
  1. Domain d6cx2a1: 6cx2 A:1-126 [350989]
    automated match to d1plqa1
    mutant
  2. Domain d6cx2a2: 6cx2 A:127-254 [350990]
    automated match to d1plqa2
    mutant
7. Domains for 6cx3:
  1. Domain d6cx3a1: 6cx3 A:1-126 [350943]
    automated match to d1plqa1
    mutant
  2. Domain d6cx3a2: 6cx3 A:127-255 [350944]
    automated match to d1plqa2
    mutant
8. Domains for 6cx4:
  1. Domain d6cx4a1: 6cx4 A:1-126 [350816]
    Other proteins in same PDB: d6cx4a3
    automated match to d1plqa1
    mutant
  2. Domain d6cx4a2: 6cx4 A:127-254 [350823]
    Other proteins in same PDB: d6cx4a3
    automated match to d1plqa2
    mutant
9. Domains for 6d0q:
  1. Domain d6d0qa1: 6d0q A:1-126 [368820]
    automated match to d1plqa1
  2. Domain d6d0qa2: 6d0q A:127-258 [368821]
    automated match to d1plqa2
10. Domains for 6d0r:
  1. Domain d6d0ra1: 6d0r A:1-126 [368810]
    automated match to d1plqa1
  2. Domain d6d0ra2: 6d0r A:127-256 [368811]
    automated match to d1plqa2
11. Domains for 6e49:
  1. Domain d6e49a1: 6e49 A:1-126 [356662]
    automated match to d1plqa1
    protein/DNA complex
  2. Domain d6e49a2: 6e49 A:127-255 [356663]
    automated match to d1plqa2
    protein/DNA complex
  3. Domain d6e49b1: 6e49 B:1-126 [356381]
    automated match to d1plqa1
    protein/DNA complex
  4. Domain d6e49b2: 6e49 B:127-255 [356382]
    automated match to d1plqa2
    protein/DNA complex
  5. Domain d6e49c1: 6e49 C:1-126 [356386]
    automated match to d1plqa1
    protein/DNA complex
  6. Domain d6e49c2: 6e49 C:127-254 [356387]
    automated match to d1plqa2
    protein/DNA complex
Haloferax volcanii [TaxId:2246] [225733] (1 PDB entry)
- Domains for 3ifv:
  1. Domain d3ifva1: 3ifv A:2-112 [211664]
    automated match to d1ge8a1
    complexed with na
  2. Domain d3ifva2: 3ifv A:113-243 [211665]
    automated match to d1ge8a2
    complexed with na
  3. Domain d3ifvb1: 3ifv B:2-112 [211666]
    automated match to d1ge8a1
    complexed with na
  4. Domain d3ifvb2: 3ifv B:113-243 [211667]
    automated match to d1ge8a2
    complexed with na
  5. Domain d3ifvc1: 3ifv C:2-112 [211668]
    automated match to d1ge8a1
    complexed with na
  6. Domain d3ifvc2: 3ifv C:113-243 [211669]
    automated match to d1ge8a2
    complexed with na
Human (Homo sapiens) [TaxId:9606] [55991] (10 PDB entries)
Uniprot P12004
1. Domains for 1axc:
  1. Domain d1axca1: 1axc A:1-126 [41392]
    protein/DNA complex
  2. Domain d1axca2: 1axc A:127-255 [41393]
    protein/DNA complex
  3. Domain d1axcc1: 1axc C:1-126 [41394]
    protein/DNA complex
  4. Domain d1axcc2: 1axc C:127-255 [41395]
    protein/DNA complex
  5. Domain d1axce1: 1axc E:1-126 [41396]
    protein/DNA complex
  6. Domain d1axce2: 1axc E:127-255 [41397]
    protein/DNA complex
2. Domains for 1u76:
  1. Domain d1u76a1: 1u76 A:1-126 [113077]
    complexed with a target peptide
  2. Domain d1u76a2: 1u76 A:127-255 [113078]
    complexed with a target peptide
  3. Domain d1u76c1: 1u76 C:1-126 [113079]
    complexed with a target peptide
  4. Domain d1u76c2: 1u76 C:127-255 [113080]
    complexed with a target peptide
  5. Domain d1u76e1: 1u76 E:1-126 [113081]
    complexed with a target peptide
  6. Domain d1u76e2: 1u76 E:127-255 [113082]
    complexed with a target peptide
3. Domains for 1u7b:
  1. Domain d1u7ba1: 1u7b A:1-126 [113083]
    complexed with a target peptide
  2. Domain d1u7ba2: 1u7b A:127-255 [113084]
    complexed with a target peptide
4. Domains for 1ul1:
  1. Domain d1ul1a1: 1ul1 A:1-126 [119684]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automated match to d1u7ba1
    protein/DNA complex; complexed with mg
  2. Domain d1ul1a2: 1ul1 A:127-259 [119685]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automated match to d1u7ba2
    protein/DNA complex; complexed with mg
  3. Domain d1ul1b1: 1ul1 B:1-126 [119686]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automated match to d1u7ba1
    protein/DNA complex; complexed with mg
  4. Domain d1ul1b2: 1ul1 B:127-258 [119687]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automated match to d1u7ba2
    protein/DNA complex; complexed with mg
  5. Domain d1ul1c1: 1ul1 C:1-126 [119688]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automated match to d1u7ba1
    protein/DNA complex; complexed with mg
  6. Domain d1ul1c2: 1ul1 C:127-255 [119689]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automated match to d1u7ba2
    protein/DNA complex; complexed with mg
5. Domains for 1vyj:
  1. Domain d1vyja1: 1vyj A:1-126 [120530]
    automated match to d1u7ba1
    protein/DNA complex
  2. Domain d1vyja2: 1vyj A:127-257 [120531]
    automated match to d1u7ba2
    protein/DNA complex
  3. Domain d1vyjc1: 1vyj C:1-126 [120532]
    automated match to d1u7ba1
    protein/DNA complex
  4. Domain d1vyjc2: 1vyj C:127-257 [120533]
    automated match to d1u7ba2
    protein/DNA complex
  5. Domain d1vyje1: 1vyj E:1-126 [120534]
    automated match to d1u7ba1
    protein/DNA complex
  6. Domain d1vyje2: 1vyj E:127-257 [120535]
    automated match to d1u7ba2
    protein/DNA complex
  7. Domain d1vyjg1: 1vyj G:1-126 [120536]
    automated match to d1u7ba1
    protein/DNA complex
  8. Domain d1vyjg2: 1vyj G:127-260 [120537]
    automated match to d1u7ba2
    protein/DNA complex
  9. Domain d1vyji1: 1vyj I:1-126 [120538]
    automated match to d1u7ba1
    protein/DNA complex
  10. Domain d1vyji2: 1vyj I:127-257 [120539]
    automated match to d1u7ba2
    protein/DNA complex
  11. Domain d1vyjk1: 1vyj K:1-126 [120540]
    automated match to d1u7ba1
    protein/DNA complex
  12. Domain d1vyjk2: 1vyj K:127-257 [120541]
    automated match to d1u7ba2
    protein/DNA complex
6. Domains for 1vym:
  1. Domain d1vyma1: 1vym A:1-126 [120542]
    automated match to d1u7ba1
  2. Domain d1vyma2: 1vym A:127-256 [120543]
    automated match to d1u7ba2
  3. Domain d1vymb1: 1vym B:1-126 [120544]
    automated match to d1u7ba1
  4. Domain d1vymb2: 1vym B:127-256 [120545]
    automated match to d1u7ba2
  5. Domain d1vymc1: 1vym C:1-126 [120546]
    automated match to d1u7ba1
  6. Domain d1vymc2: 1vym C:127-256 [120547]
    automated match to d1u7ba2
7. Domains for 3tbl:
  1. Domain d3tbla1: 3tbl A:1-126 [216722]
    Other proteins in same PDB: d3tbld_, d3tble_
    automated match to d1u7ba1
  2. Domain d3tbla2: 3tbl A:127-256 [216723]
    Other proteins in same PDB: d3tbld_, d3tble_
    automated match to d1u7ba2
  3. Domain d3tblb1: 3tbl B:1-126 [216724]
    Other proteins in same PDB: d3tbld_, d3tble_
    automated match to d1u7ba1
  4. Domain d3tblb2: 3tbl B:127-256 [216725]
    Other proteins in same PDB: d3tbld_, d3tble_
    automated match to d1u7ba2
  5. Domain d3tblc1: 3tbl C:1-126 [216726]
    Other proteins in same PDB: d3tbld_, d3tble_
    automated match to d1u7ba1
  6. Domain d3tblc2: 3tbl C:127-258 [216727]
    Other proteins in same PDB: d3tbld_, d3tble_
    automated match to d1u7ba2
8. Domains for 3vkx:
  1. Domain d3vkxa1: 3vkx A:1-126 [217905]
    automated match to d1u7ba1
    complexed with cl, so4, t3
  2. Domain d3vkxa2: 3vkx A:127-255 [217906]
    automated match to d1u7ba2
    complexed with cl, so4, t3
9. Domains for 3wgw:
  1. Domain d3wgwa1: 3wgw A:1-126 [236661]
    automated match to d1u7ba1
    protein/DNA complex; complexed with so4, t2b
  2. Domain d3wgwa2: 3wgw A:127-255 [236662]
    automated match to d1u7ba2
    protein/DNA complex; complexed with so4, t2b
  3. Domain d3wgwb1: 3wgw B:1-126 [236659]
    automated match to d1u7ba1
    protein/DNA complex; complexed with so4, t2b
  4. Domain d3wgwb2: 3wgw B:127-255 [236660]
    automated match to d1u7ba2
    protein/DNA complex; complexed with so4, t2b
10. Domains for 7efa:
  1. Domain d7efaa1: 7efa A:1-126 [405163]
    automated match to d1u7ba1
    protein/DNA complex
  2. Domain d7efaa2: 7efa A:127-256 [405164]
    automated match to d1u7ba2
    protein/DNA complex
Pyrococcus furiosus [TaxId:186497] [316219] (1 PDB entry)
- Domains for 5auj:
  1. Domain d5auja1: 5auj A:2-120 [316223]
    automated match to d1isqa1
  2. Domain d5auja2: 5auj A:128-247 [316226]
    automated match to d1isqa2
Pyrococcus furiosus [TaxId:2261] [55992] (5 PDB entries)
1. Domains for 1ge8:
  1. Domain d1ge8a1: 1ge8 A:2-117 [41398]
  2. Domain d1ge8a2: 1ge8 A:126-247 [41399]
2. Domains for 1isq:
  1. Domain d1isqa1: 1isq A:2-119 [76779]
    protein/DNA complex
  2. Domain d1isqa2: 1isq A:126-247 [76780]
    protein/DNA complex
3. Domains for 1iz4:
  1. Domain d1iz4a1: 1iz4 A:2-120 [83832]
    mutant
  2. Domain d1iz4a2: 1iz4 A:126-247 [83833]
    mutant
4. Domains for 1iz5:
  1. Domain d1iz5a1: 1iz5 A:2-120 [83834]
    mutant
  2. Domain d1iz5a2: 1iz5 A:126-246 [83835]
    mutant
  3. Domain d1iz5b1: 1iz5 B:2-120 [83836]
    mutant
  4. Domain d1iz5b2: 1iz5 B:126-246 [83837]
    mutant
5. Domains for 3a2f:
  1. Domain d3a2fb1: 3a2f B:2-117 [208098]
    Other proteins in same PDB: d3a2fa1, d3a2fa2
    automated match to d1ge8a1
    protein/DNA complex; mutant
  2. Domain d3a2fb2: 3a2f B:118-248 [208099]
    Other proteins in same PDB: d3a2fa1, d3a2fa2
    automated match to d1ge8a2
    protein/DNA complex; mutant
Sulfolobus tokodaii [TaxId:111955] [111175] (1 PDB entry)
Uniprot Q975N2
- Domains for 1ud9:
  1. Domain d1ud9a1: 1ud9 A:1-119 [107768]
    complexed with zn
  2. Domain d1ud9a2: 1ud9 A:127-245 [107769]
    complexed with zn
  3. Domain d1ud9b1: 1ud9 B:1-119 [107770]
    complexed with zn
  4. Domain d1ud9b2: 1ud9 B:127-245 [107771]
    complexed with zn
  5. Domain d1ud9c1: 1ud9 C:1-119 [107772]
    complexed with zn
  6. Domain d1ud9c2: 1ud9 C:127-245 [107773]
    complexed with zn
  7. Domain d1ud9d1: 1ud9 D:1-119 [107774]
    complexed with zn
  8. Domain d1ud9d2: 1ud9 D:127-245 [107775]
    complexed with zn

More info for Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor

Timeline for Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor:

Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor first appeared (with stable ids) in SCOP 1.55, called Protein Prolifirating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor
Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor appears in SCOPe 2.06
Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor appears in the current release, SCOPe 2.08