SCOPe 2.05: Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Lineage for Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Root: SCOPe 2.05
Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
Fold d.129: TBP-like [55944] (11 superfamilies)
beta-alpha-beta(4)-alpha
Superfamily d.129.1: TATA-box binding protein-like [55945] (3 families)
Family d.129.1.1: TATA-box binding protein (TBP), C-terminal domain [55946] (1 protein)
duplication: consists of two clear structural repeats
automatically mapped to Pfam PF00352
Protein TATA-box binding protein (TBP), C-terminal domain [55947] (5 species)
structure of the N-terminal domain is not known yet
Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [55949] (13 PDB entries)

PDB entries in Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]:

Domain(s) for 1qn3:
1. Domain d1qn3a1: 1qn3 A:16-115 [41250]
2. Domain d1qn3a2: 1qn3 A:116-198 [41251]
3. Domain d1qn3b1: 1qn3 B:12-115 [41252]
4. Domain d1qn3b2: 1qn3 B:116-198 [41253]
Domain(s) for 1qn4:
1. Domain d1qn4a1: 1qn4 A:16-115 [41238]
2. Domain d1qn4a2: 1qn4 A:116-198 [41239]
3. Domain d1qn4b1: 1qn4 B:12-115 [41240]
4. Domain d1qn4b2: 1qn4 B:116-198 [41241]
Domain(s) for 1qn5:
1. Domain d1qn5a1: 1qn5 A:16-115 [41234]
2. Domain d1qn5a2: 1qn5 A:116-198 [41235]
3. Domain d1qn5b1: 1qn5 B:12-115 [41236]
4. Domain d1qn5b2: 1qn5 B:116-197 [41237]
Domain(s) for 1qn6:
1. Domain d1qn6a1: 1qn6 A:15-115 [41254]
2. Domain d1qn6a2: 1qn6 A:116-198 [41255]
3. Domain d1qn6b1: 1qn6 B:12-115 [41256]
4. Domain d1qn6b2: 1qn6 B:116-198 [41257]
Domain(s) for 1qn7:
1. Domain d1qn7a1: 1qn7 A:13-115 [41262]
2. Domain d1qn7a2: 1qn7 A:116-198 [41263]
3. Domain d1qn7b1: 1qn7 B:12-115 [41264]
4. Domain d1qn7b2: 1qn7 B:116-197 [41265]
Domain(s) for 1qn8:
1. Domain d1qn8a1: 1qn8 A:16-115 [41258]
2. Domain d1qn8a2: 1qn8 A:116-198 [41259]
3. Domain d1qn8b1: 1qn8 B:12-115 [41260]
4. Domain d1qn8b2: 1qn8 B:116-198 [41261]
Domain(s) for 1qn9:
1. Domain d1qn9a1: 1qn9 A:16-115 [41230]
2. Domain d1qn9a2: 1qn9 A:116-198 [41231]
3. Domain d1qn9b1: 1qn9 B:12-115 [41232]
4. Domain d1qn9b2: 1qn9 B:116-197 [41233]
Domain(s) for 1qna:
1. Domain d1qnaa1: 1qna A:17-115 [41226]
2. Domain d1qnaa2: 1qna A:116-198 [41227]
3. Domain d1qnab1: 1qna B:12-115 [41228]
4. Domain d1qnab2: 1qna B:116-197 [41229]
Domain(s) for 1qnb:
1. Domain d1qnba1: 1qnb A:16-115 [41266]
2. Domain d1qnba2: 1qnb A:116-198 [41267]
3. Domain d1qnbb1: 1qnb B:12-115 [41268]
4. Domain d1qnbb2: 1qnb B:116-198 [41269]
Domain(s) for 1qnc:
1. Domain d1qnca1: 1qnc A:16-115 [41270]
2. Domain d1qnca2: 1qnc A:116-198 [41271]
3. Domain d1qncb1: 1qnc B:12-115 [41272]
4. Domain d1qncb2: 1qnc B:116-198 [41273]
Domain(s) for 1qne:
1. Domain d1qnea1: 1qne A:12-115 [41246]
2. Domain d1qnea2: 1qne A:116-198 [41247]
3. Domain d1qneb1: 1qne B:11-115 [41248]
4. Domain d1qneb2: 1qne B:116-198 [41249]
Domain(s) for 1vok:
1. Domain d1voka1: 1vok A:7-115 [41242]
  complexed with so4
2. Domain d1voka2: 1vok A:116-198 [41243]
  complexed with so4
3. Domain d1vokb1: 1vok B:12-115 [41244]
  complexed with so4
4. Domain d1vokb2: 1vok B:116-199 [41245]
  complexed with so4
Domain(s) for 1vol:
1. Domain d1volb1: 1vol B:12-115 [41274]
  Other proteins in same PDB: d1vola1, d1vola2
  protein/DNA complex
2. Domain d1volb2: 1vol B:116-198 [41275]
  Other proteins in same PDB: d1vola1, d1vola2
  protein/DNA complex

More info for Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain

Timeline for Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain:

Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain first appeared (with stable ids) in SCOP 1.55, called Species Arabidopsis thaliana [TaxId:3702] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain
Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain appears in SCOPe 2.04
Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain appears in SCOPe 2.06
Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain appears in the current release, SCOPe 2.08