Lineage for Protein: TATA-box binding protein (TBP), C-terminal domain

  1. Root: SCOP 1.67
  2. 405194Class d: Alpha and beta proteins (a+b) [53931] (260 folds)
  3. 418216Fold d.129: TBP-like [55944] (7 superfamilies)
    beta-alpha-beta(4)-alpha
  4. 418217Superfamily d.129.1: TATA-box binding protein-like [55945] (2 families) (S)
  5. 418218Family d.129.1.1: TATA-box binding protein (TBP), C-terminal domain [55946] (1 protein)
    duplication: consists of two clear structural repeats
  6. 418219Protein TATA-box binding protein (TBP), C-terminal domain [55947] (5 species)
    structure of the N-terminal domain is not known yet

Species:

  1. 418220Arabidopsis thaliana [TaxId:3702] [55949] (13 PDB entries)
    1. Domains for 1qn3:
      1. 418245Domain d1qn3a1: 1qn3 A:16-115 [41250]
      2. 418246Domain d1qn3a2: 1qn3 A:116-198 [41251]
      3. 418247Domain d1qn3b1: 1qn3 B:12-115 [41252]
      4. 418248Domain d1qn3b2: 1qn3 B:116-198 [41253]
    2. Domains for 1qn4:
      1. 418225Domain d1qn4a1: 1qn4 A:16-115 [41238]
      2. 418226Domain d1qn4a2: 1qn4 A:116-198 [41239]
      3. 418227Domain d1qn4b1: 1qn4 B:12-115 [41240]
      4. 418228Domain d1qn4b2: 1qn4 B:116-198 [41241]
    3. Domains for 1qn5:
      1. 418229Domain d1qn5a1: 1qn5 A:16-115 [41234]
      2. 418230Domain d1qn5a2: 1qn5 A:116-198 [41235]
      3. 418231Domain d1qn5b1: 1qn5 B:12-115 [41236]
      4. 418232Domain d1qn5b2: 1qn5 B:116-197 [41237]
    4. Domains for 1qn6:
      1. 418249Domain d1qn6a1: 1qn6 A:15-115 [41254]
      2. 418250Domain d1qn6a2: 1qn6 A:116-198 [41255]
      3. 418251Domain d1qn6b1: 1qn6 B:12-115 [41256]
      4. 418252Domain d1qn6b2: 1qn6 B:116-198 [41257]
    5. Domains for 1qn7:
      1. 418257Domain d1qn7a1: 1qn7 A:13-115 [41262]
      2. 418258Domain d1qn7a2: 1qn7 A:116-198 [41263]
      3. 418259Domain d1qn7b1: 1qn7 B:12-115 [41264]
      4. 418260Domain d1qn7b2: 1qn7 B:116-197 [41265]
    6. Domains for 1qn8:
      1. 418253Domain d1qn8a1: 1qn8 A:16-115 [41258]
      2. 418254Domain d1qn8a2: 1qn8 A:116-198 [41259]
      3. 418255Domain d1qn8b1: 1qn8 B:12-115 [41260]
      4. 418256Domain d1qn8b2: 1qn8 B:116-198 [41261]
    7. Domains for 1qn9:
      1. 418233Domain d1qn9a1: 1qn9 A:16-115 [41230]
      2. 418234Domain d1qn9a2: 1qn9 A:116-198 [41231]
      3. 418235Domain d1qn9b1: 1qn9 B:12-115 [41232]
      4. 418236Domain d1qn9b2: 1qn9 B:116-197 [41233]
    8. Domains for 1qna:
      1. 418221Domain d1qnaa1: 1qna A:17-115 [41226]
      2. 418222Domain d1qnaa2: 1qna A:116-198 [41227]
      3. 418223Domain d1qnab1: 1qna B:12-115 [41228]
      4. 418224Domain d1qnab2: 1qna B:116-197 [41229]
    9. Domains for 1qnb:
      1. 418261Domain d1qnba1: 1qnb A:16-115 [41266]
      2. 418262Domain d1qnba2: 1qnb A:116-198 [41267]
      3. 418263Domain d1qnbb1: 1qnb B:12-115 [41268]
      4. 418264Domain d1qnbb2: 1qnb B:116-198 [41269]
    10. Domains for 1qnc:
      1. 418265Domain d1qnca1: 1qnc A:16-115 [41270]
      2. 418266Domain d1qnca2: 1qnc A:116-198 [41271]
      3. 418267Domain d1qncb1: 1qnc B:12-115 [41272]
      4. 418268Domain d1qncb2: 1qnc B:116-198 [41273]
    11. Domains for 1qne:
      1. 418237Domain d1qnea1: 1qne A:12-115 [41246]
      2. 418238Domain d1qnea2: 1qne A:116-198 [41247]
      3. 418239Domain d1qneb1: 1qne B:11-115 [41248]
      4. 418240Domain d1qneb2: 1qne B:116-198 [41249]
    12. Domains for 1vok:
      1. 418241Domain d1voka1: 1vok A:7-115 [41242]
      2. 418242Domain d1voka2: 1vok A:116-198 [41243]
      3. 418243Domain d1vokb1: 1vok B:12-115 [41244]
      4. 418244Domain d1vokb2: 1vok B:116-199 [41245]
        complexed with so4
    13. Domains for 1vol:
      1. 418269Domain d1volb1: 1vol B:12-115 [41274]
        Other proteins in same PDB: d1vola1, d1vola2
      2. 418270Domain d1volb2: 1vol B:116-198 [41275]
        Other proteins in same PDB: d1vola1, d1vola2
        protein/DNA complex
  2. 418271Archaeon Pyrococcus woesei [TaxId:2262] [55951] (3 PDB entries)
    1. Domains for 1ais:
      1. 418272Domain d1aisa1: 1ais A:1-92 [41288]
        Other proteins in same PDB: d1aisb1, d1aisb2
      2. 418273Domain d1aisa2: 1ais A:93-181 [41289]
        Other proteins in same PDB: d1aisb1, d1aisb2
        protein/DNA complex; complexed with 5iu
    2. Domains for 1d3u:
      1. 418274Domain d1d3ua1: 1d3u A:1-92 [41290]
        Other proteins in same PDB: d1d3ub1, d1d3ub2
      2. 418275Domain d1d3ua2: 1d3u A:93-181 [41291]
        Other proteins in same PDB: d1d3ub1, d1d3ub2
    3. Domains for 1pcz:
      1. 418276Domain d1pcza1: 1pcz A:2-92 [41292]
      2. 418277Domain d1pcza2: 1pcz A:93-184 [41293]
      3. 418278Domain d1pczb1: 1pcz B:2-92 [41294]
      4. 418279Domain d1pczb2: 1pcz B:93-184 [41295]
  3. 418280Archaeon Sulfolobus acidocaldarius [TaxId:2285] [103238] (1 PDB entry)
  4. 418285Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55950] (6 PDB entries)
    1. Domains for 1ngm:
      1. 418298Domain d1ngma1: 1ngm A:61-155 [85685]
        Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
      2. 418299Domain d1ngma2: 1ngm A:156-240 [85686]
        Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
      3. 418300Domain d1ngme1: 1ngm E:61-155 [85688]
        Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
      4. 418301Domain d1ngme2: 1ngm E:156-240 [85689]
        Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
      5. 418302Domain d1ngmi1: 1ngm I:61-155 [85691]
        Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
      6. 418303Domain d1ngmi2: 1ngm I:156-240 [85692]
        Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
      7. 418304Domain d1ngmm1: 1ngm M:61-155 [85694]
        Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
      8. 418305Domain d1ngmm2: 1ngm M:156-240 [85695]
        Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
        a ternary complex with DNA and Brf1 peptide
    2. Domains for 1nh2:
      1. 418286Domain d1nh2a1: 1nh2 A:61-155 [91872]
        Other proteins in same PDB: d1nh2b_, d1nh2c_, d1nh2d1, d1nh2d2
      2. 418287Domain d1nh2a2: 1nh2 A:156-240 [91873]
        Other proteins in same PDB: d1nh2b_, d1nh2c_, d1nh2d1, d1nh2d2
        complexed with 5iu
    3. Domains for 1tba:
      1. 418306Domain d1tbab1: 1tba B:61-155 [41286]
        Other proteins in same PDB: d1tbaa_
      2. 418307Domain d1tbab2: 1tba B:156-240 [41287]
        Other proteins in same PDB: d1tbaa_
    4. Domains for 1tbp:
      1. 418294Domain d1tbpa1: 1tbp A:61-155 [41282]
      2. 418295Domain d1tbpa2: 1tbp A:156-240 [41283]
      3. 418296Domain d1tbpb1: 1tbp B:61-155 [41284]
      4. 418297Domain d1tbpb2: 1tbp B:156-240 [41285]
    5. Domains for 1ytb:
      1. 418288Domain d1ytba1: 1ytb A:61-155 [41276]
      2. 418289Domain d1ytba2: 1ytb A:156-240 [41277]
      3. 418290Domain d1ytbb1: 1ytb B:61-155 [41278]
      4. 418291Domain d1ytbb2: 1ytb B:156-240 [41279]
        complexed with DNA containing TATA-box
        protein/DNA complex
    6. Domains for 1ytf:
      1. 418292Domain d1ytfa1: 1ytf A:61-155 [41280]
        Other proteins in same PDB: d1ytfb_, d1ytfc_, d1ytfd1, d1ytfd2
      2. 418293Domain d1ytfa2: 1ytf A:156-240 [41281]
        Other proteins in same PDB: d1ytfb_, d1ytfc_, d1ytfd1, d1ytfd2
        protein/DNA complex
  5. 418308Human (Homo sapiens) [TaxId:9606] [55948] (5 PDB entries)
    1. Domains for 1c9b:
      1. 418315Domain d1c9bb1: 1c9b B:158-252 [41216]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
      2. 418316Domain d1c9bb2: 1c9b B:253-337 [41217]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
      3. 418317Domain d1c9bf1: 1c9b F:158-252 [41218]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
      4. 418318Domain d1c9bf2: 1c9b F:253-337 [41219]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
      5. 418319Domain d1c9bj1: 1c9b J:158-252 [41220]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
      6. 418320Domain d1c9bj2: 1c9b J:253-337 [41221]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
      7. 418321Domain d1c9bn1: 1c9b N:158-252 [41222]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
      8. 418322Domain d1c9bn2: 1c9b N:253-337 [41223]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
      9. 418323Domain d1c9br1: 1c9b R:158-252 [41224]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
      10. 418324Domain d1c9br2: 1c9b R:253-337 [41225]
        Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    2. Domains for 1cdw:
      1. 418309Domain d1cdwa1: 1cdw A:155-252 [41212]
      2. 418310Domain d1cdwa2: 1cdw A:253-333 [41213]
        protein/DNA complex
    3. Domains for 1jfi:
      1. 418313Domain d1jfic1: 1jfi C:356-456 [62938]
        Other proteins in same PDB: d1jfia_, d1jfib_
      2. 418314Domain d1jfic2: 1jfi C:457-538 [62939]
        Other proteins in same PDB: d1jfia_, d1jfib_
    4. Domains for 1nvp:
      1. 418311Domain d1nvpa1: 1nvp A:159-252 [92209]
        Other proteins in same PDB: d1nvpb_, d1nvpc_, d1nvpd1, d1nvpd2
      2. 418312Domain d1nvpa2: 1nvp A:253-338 [92210]
        Other proteins in same PDB: d1nvpb_, d1nvpc_, d1nvpd1, d1nvpd2
    5. Domains for 1tgh:
      1. 418325Domain d1tgha1: 1tgh A:155-252 [41214]
      2. 418326Domain d1tgha2: 1tgh A:253-334 [41215]
        protein/DNA complex

More info for Protein TATA-box binding protein (TBP), C-terminal domain from d.129.1.1: TATA-box binding protein (TBP), C-terminal domain

Timeline for Protein TATA-box binding protein (TBP), C-terminal domain from d.129.1.1: TATA-box binding protein (TBP), C-terminal domain: