SCOPe 2.04: Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like

Lineage for Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.118: N-acetylmuramoyl-L-alanine amidase-like [55845] (1 superfamily)
   contains mixed beta-sheet

4. Superfamily d.118.1: N-acetylmuramoyl-L-alanine amidase-like [55846] (2 families)

5. Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like [55847] (11 proteins)
   Family 2 zinc amidase;

Proteins:

1. AmpD protein [82775] (1 species)

   • Species Citrobacter freundii [TaxId:546] [82776] (6 PDB entries)

2. Bacteriophage T7 lysozyme (Zn amidase) [55848] (1 species)

   • Species Bacteriophage T7 [TaxId:10760] [55849] (2 PDB entries)

3. N-acetylmuramoyl-L-alanine amidase PlyG [143780] (1 species)

   • Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [143781] (2 PDB entries)
     Uniprot Q81WA9 1-157
     Prophage LambdaBa02

4. Peptidoglycan recognition protein I-alpha [111141] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [111142] (4 PDB entries)
     Uniprot Q96LB9 177-341

5. Peptidoglycan recognition protein, PGRP-S [143786] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [143787] (1 PDB entry)
     Uniprot O75594 30-196

6. Peptidoglycan recognition protein-lb (Cg14704) [90024] (1 species)

   • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [90025] (1 PDB entry)

7. Peptidoglycan-recognition protein-LC [143784] (1 species)

   • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [143785] (2 PDB entries)
     Uniprot Q9GNK5 335-499! Uniprot Q9GNK5 355-520
     Cg4432; different splicing isoforms

8. Peptidoglycan-recognition protein-LE [143788] (1 species)

   • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [143789] (1 PDB entry)
     Uniprot Q9VXN9 174-344

9. Peptidoglycan-recognition protein-SA (Cg11709) [111139] (1 species)

   • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [111140] (2 PDB entries)
     Uniprot Q9VYX7 37-203 ! Uniprot Q9VYX7

10. Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain [143782] (1 species)

    • Species Escherichia coli [TaxId:562] [143783] (2 PDB entries)
      Uniprot P75820 22-194

11. automated matches [190549] (4 species)
    not a true protein

    1. Species Bacillus phage [TaxId:347962] [255404] (1 PDB entry)

    2. Species Camel (Camelus dromedarius) [TaxId:9838] [188016] (28 PDB entries)

    3. Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [187529] (1 PDB entry)

    4. Species Human (Homo sapiens) [TaxId:9606] [187654] (1 PDB entry)

More info for Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like

Timeline for Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like:

• Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like first appeared (with stable ids) in SCOP 1.55, called Family d.118.1.1: Bacteriophage T7 lysozyme (Zn amidase)
  
• Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like appears in SCOPe 2.03
  
• Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like appears in SCOPe 2.05
  
• Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like appears in the current release, SCOPe 2.08