SCOP 1.73: Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like

Lineage for Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like

1. Root: SCOP 1.73

2. Class d: Alpha and beta proteins (a+b) [53931] (334 folds)

3. Fold d.118: N-acetylmuramoyl-L-alanine amidase-like [55845] (1 superfamily)
   contains mixed beta-sheet

4. Superfamily d.118.1: N-acetylmuramoyl-L-alanine amidase-like [55846] (1 family)

5. Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like [55847] (10 proteins)
   Family 2 zinc amidase;

Proteins:

1. AmpD protein [82775] (1 species)

   • Species Citrobacter freundii [TaxId:546] [82776] (1 PDB entry)

2. Bacteriophage T7 lysozyme (Zn amidase) [55848] (1 species)

   • Species Bacteriophage T7 [TaxId:10760] [55849] (2 PDB entries)

3. N-acetylmuramoyl-L-alanine amidase PlyG [143780] (1 species)

   • Species Bacillus anthracis [TaxId:1392] [143781] (2 PDB entries)
     Prophage LambdaBa02

4. Peptidoglycan recognition protein I-alpha [111141] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [111142] (4 PDB entries)

5. Peptidoglycan recognition protein, PGRP-S [143786] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [143787] (1 PDB entry)

6. Peptidoglycan recognition protein-lb (Cg14704) [90024] (1 species)

   • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [90025] (1 PDB entry)

7. Peptidoglycan-recognition protein-LC [143784] (1 species)

   • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [143785] (2 PDB entries)
     Cg4432; different splicing isoforms

8. Peptidoglycan-recognition protein-LE [143788] (1 species)

   • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [143789] (1 PDB entry)

9. Peptidoglycan-recognition protein-SA (Cg11709) [111139] (1 species)

   • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [111140] (2 PDB entries)

10. Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain [143782] (1 species)

    • Species Escherichia coli [TaxId:562] [143783] (2 PDB entries)

More info for Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like

Timeline for Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like:

• Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like first appeared (with stable ids) in SCOP 1.55, called Family d.118.1.1: Bacteriophage T7 lysozyme (Zn amidase)
  
• Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like appears in SCOP 1.71
  
• Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like appears in SCOP 1.75
  
• Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like appears in the current release, SCOPe 2.08