Lineage for Species: Escherichia coli [TaxId: 562]

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2578667Fold d.117: Thymidylate synthase/dCMP hydroxymethylase [55830] (1 superfamily)
    contains large mixed beta-sheet
  4. 2578668Superfamily d.117.1: Thymidylate synthase/dCMP hydroxymethylase [55831] (2 families) (S)
    automatically mapped to Pfam PF00303
  5. 2578669Family d.117.1.1: Thymidylate synthase/dCMP hydroxymethylase [55832] (4 proteins)
  6. 2578767Protein Thymidylate synthase [55833] (7 species)
  7. 2578782Species Escherichia coli [TaxId:562] [55834] (71 PDB entries)

PDB entries in Species: Escherichia coli [TaxId: 562]:

  1. Domain(s) for 1aiq:
    1. 2578843Domain d1aiqa_: 1aiq A: [40967]
      complexed with cb3, ump; mutant
    2. 2578844Domain d1aiqb_: 1aiq B: [40968]
      complexed with cb3, ump; mutant
  2. Domain(s) for 1ajm:
  3. Domain(s) for 1an5:
    1. 2578875Domain d1an5a_: 1an5 A: [40986]
      complexed with cb3, po4
    2. 2578876Domain d1an5b_: 1an5 B: [40987]
      complexed with cb3, po4
  4. Domain(s) for 1aob:
  5. Domain(s) for 1axw:
    1. 2578812Domain d1axwa_: 1axw A: [40938]
      complexed with mtx, ump
    2. 2578813Domain d1axwb_: 1axw B: [40939]
      complexed with mtx, ump
  6. Domain(s) for 1bdu:
  7. Domain(s) for 1bid:
  8. Domain(s) for 1bjg:
  9. Domain(s) for 1bq1:
    1. 2578845Domain d1bq1a_: 1bq1 A: [40965]
      complexed with cb3, ump; mutant
    2. 2578846Domain d1bq1b_: 1bq1 B: [40966]
      complexed with cb3, ump; mutant
  10. Domain(s) for 1bq2:
  11. Domain(s) for 1ddu:
    1. 2578849Domain d1ddua_: 1ddu A: [40961]
      complexed with cb3, ddu, po4
    2. 2578850Domain d1ddub_: 1ddu B: [40962]
      complexed with cb3, ddu, po4
  12. Domain(s) for 1dna:
    1. 2578839Domain d1dnaa_: 1dna A: [40956]
      complexed with cb3, ump; mutant
    2. 2578840Domain d1dnab_: 1dna B: [40957]
      complexed with cb3, ump; mutant
  13. Domain(s) for 1ev5:
  14. Domain(s) for 1ev8:
  15. Domain(s) for 1evf:
  16. Domain(s) for 1evg:
  17. Domain(s) for 1f4b:
  18. Domain(s) for 1f4c:
    1. 2578879Domain d1f4ca_: 1f4c A: [40950]
      complexed with gol, so4, tp2
    2. 2578880Domain d1f4cb_: 1f4c B: [40951]
      complexed with gol, so4, tp2
  19. Domain(s) for 1f4d:
    1. 2578892Domain d1f4da_: 1f4d A: [40972]
      complexed with gol, so4, tp2
    2. 2578893Domain d1f4db_: 1f4d B: [40973]
      complexed with gol, so4, tp2
  20. Domain(s) for 1f4e:
  21. Domain(s) for 1f4f:
    1. 2578877Domain d1f4fa_: 1f4f A: [40946]
      complexed with so4, tp3
    2. 2578878Domain d1f4fb_: 1f4f B: [40947]
      complexed with so4, tp3
  22. Domain(s) for 1f4g:
    1. 2578853Domain d1f4ga_: 1f4g A: [40933]
      complexed with gol, so4, tp4
    2. 2578854Domain d1f4gb_: 1f4g B: [40934]
      complexed with gol, so4, tp4
  23. Domain(s) for 1ffl:
  24. Domain(s) for 1fwm:
    1. 2578896Domain d1fwma_: 1fwm A: [90500]
      complexed with cb3, so4; mutant
    2. 2578897Domain d1fwmb_: 1fwm B: [90501]
      complexed with cb3, so4; mutant
  25. Domain(s) for 1jg0:
    1. 2578830Domain d1jg0a_: 1jg0 A: [66659]
      complexed with ddt, ump
    2. 2578831Domain d1jg0b_: 1jg0 B: [66660]
      complexed with ddt, ump
  26. Domain(s) for 1jtq:
    1. 2578900Domain d1jtqa_: 1jtq A: [63282]
      complexed with ly3, ump
    2. 2578901Domain d1jtqb_: 1jtq B: [63283]
      complexed with ly3, ump
  27. Domain(s) for 1jtu:
    1. 2578859Domain d1jtua_: 1jtu A: [63284]
      complexed with lyb, ump
    2. 2578860Domain d1jtub_: 1jtu B: [63285]
      complexed with lyb, ump
  28. Domain(s) for 1jut:
    1. 2578890Domain d1juta_: 1jut A: [63301]
      complexed with lyd, ump
    2. 2578891Domain d1jutb_: 1jut B: [63302]
      complexed with lyd, ump
  29. Domain(s) for 1kce:
    1. 2578816Domain d1kcea1: 1kce A:2-264 [40944]
      Other proteins in same PDB: d1kcea2, d1kceb2
      complexed with cb3, ump; mutant
    2. 2578817Domain d1kceb1: 1kce B:2-264 [40945]
      Other proteins in same PDB: d1kcea2, d1kceb2
      complexed with cb3, ump; mutant
  30. Domain(s) for 1kzi:
    1. 2578810Domain d1kzia_: 1kzi A: [73363]
      complexed with co3, dtt, dtu, gol, thg, ump
    2. 2578811Domain d1kzib_: 1kzi B: [73364]
      complexed with co3, dtt, dtu, gol, thg, ump
  31. Domain(s) for 1kzj:
    1. 2578884Domain d1kzja_: 1kzj A: [73365]
      complexed with cb3, ump
    2. 2578885Domain d1kzjb_: 1kzj B: [73366]
      complexed with cb3, ump
    3. 2578886Domain d1kzjc_: 1kzj C: [73367]
      complexed with cb3, ump
    4. 2578887Domain d1kzjd_: 1kzj D: [73368]
      complexed with cb3, ump
    5. 2578888Domain d1kzje_: 1kzj E: [73369]
      complexed with cb3, ump
    6. 2578889Domain d1kzjf_: 1kzj F: [73370]
      complexed with cb3, ump
  32. Domain(s) for 1nce:
    1. 2578865Domain d1ncea_: 1nce A: [80401]
      complexed with cb3, ump
    2. 2578866Domain d1nceb_: 1nce B: [80402]
      complexed with cb3, ump
  33. Domain(s) for 1qqq:
  34. Domain(s) for 1syn:
    1. 2578835Domain d1syna_: 1syn A: [40958]
      complexed with f89, ump
    2. 2578836Domain d1synb_: 1syn B: [40959]
      complexed with f89, ump
  35. Domain(s) for 1tdu:
    1. 2578841Domain d1tdua_: 1tdu A: [40963]
      complexed with cb3, dur, po4
    2. 2578842Domain d1tdub_: 1tdu B: [40964]
      complexed with cb3, dur, po4
  36. Domain(s) for 1tjs:
  37. Domain(s) for 1tlc:
    1. 2578837Domain d1tlca_: 1tlc A: [40942]
      complexed with dgp, f89
    2. 2578838Domain d1tlcb_: 1tlc B: [40943]
      complexed with dgp, f89
  38. Domain(s) for 1tls:
    1. 2578870Domain d1tlsa1: 1tls A:2-264 [40982]
      Other proteins in same PDB: d1tlsa2, d1tlsb2
      complexed with c2f, ufp
    2. 2578871Domain d1tlsb1: 1tls B:2-264 [40983]
      Other proteins in same PDB: d1tlsa2, d1tlsb2
      complexed with c2f, ufp
  39. Domain(s) for 1trg:
  40. Domain(s) for 1tsd:
    1. 2578832Domain d1tsda_: 1tsd A: [40948]
      complexed with bme, f89, ump
    2. 2578833Domain d1tsdb_: 1tsd B: [40949]
      complexed with bme, f89, ump
  41. Domain(s) for 1tsn:
  42. Domain(s) for 1tys:
  43. Domain(s) for 1zpr:
    1. 2578862Domain d1zpra_: 1zpr A: [40978]
      complexed with cb3, ump; mutant
    2. 2578863Domain d1zprb_: 1zpr B: [40979]
      complexed with cb3, ump; mutant
  44. Domain(s) for 2a9w:
    1. 2578801Domain d2a9wa_: 2a9w A: [126456]
      automated match to d1an5a_
      complexed with 2br, bme, ga9, gol, po4, ump
    2. 2578802Domain d2a9wb_: 2a9w B: [126457]
      automated match to d1an5a_
      complexed with 2br, bme, ga9, gol, po4, ump
    3. 2578803Domain d2a9wc_: 2a9w C: [126458]
      automated match to d1an5a_
      complexed with 2br, bme, ga9, gol, po4, ump
    4. 2578804Domain d2a9wd_: 2a9w D: [126459]
      automated match to d1an5a_
      complexed with 2br, bme, ga9, gol, po4, ump
  45. Domain(s) for 2bbq:
    1. 2578857Domain d2bbqa_: 2bbq A: [40974]
      complexed with pfg, ump
    2. 2578858Domain d2bbqb_: 2bbq B: [40975]
      complexed with pfg, ump
  46. Domain(s) for 2ftn:
  47. Domain(s) for 2fto:
  48. Domain(s) for 2ftq:
  49. Domain(s) for 2g8m:
    1. 2578787Domain d2g8ma_: 2g8m A: [303922]
      automated match to d4geva_
      complexed with cb3, ump
    2. 2578788Domain d2g8mb_: 2g8m B: [303923]
      automated match to d4geva_
      complexed with cb3, ump
  50. Domain(s) for 2g8o:
    1. 2578789Domain d2g8oa_: 2g8o A: [303924]
      automated match to d1f4ba_
      complexed with cb3, ump
    2. 2578790Domain d2g8ob_: 2g8o B: [303925]
      automated match to d1f4ba_
      complexed with cb3, ump
  51. Domain(s) for 2g8x:
    1. 2578807Domain d2g8xa_: 2g8x A: [164605]
      automated match to d1an5a_
      complexed with co3, dtt, po4
    2. 2578808Domain d2g8xb_: 2g8x B: [164606]
      automated match to d1an5a_
      complexed with co3, dtt, po4
  52. Domain(s) for 2kce:
    1. 2578873Domain d2kcea_: 2kce A: [40984]
      complexed with d16, ump
    2. 2578874Domain d2kceb_: 2kce B: [40985]
      complexed with d16, ump
  53. Domain(s) for 2tsc:
    1. 2578828Domain d2tsca_: 2tsc A: [40952]
      complexed with cb3, ump
    2. 2578829Domain d2tscb_: 2tsc B: [40953]
      complexed with cb3, ump
  54. Domain(s) for 2vet:
  55. Domain(s) for 2vf0:
    1. 2578907Domain d2vf0a_: 2vf0 A: [243863]
      automated match to d2veta_
      protein/RNA complex; complexed with f89, ndu, so4
    2. 2578908Domain d2vf0b_: 2vf0 B: [243864]
      automated match to d2veta_
      protein/RNA complex; complexed with f89, ndu, so4
  56. Domain(s) for 3b5b:
    1. 2578904Domain d3b5ba_: 3b5b A: [172428]
      automated match to d1aiqa_
      complexed with fmt, ndn, ndu
    2. 2578905Domain d3b5bb_: 3b5b B: [172429]
      automated match to d1aiqa_
      complexed with fmt, ndn, ndu
  57. Domain(s) for 3b9h:
  58. Domain(s) for 3bfi:
  59. Domain(s) for 3bgx:
    • 2578869Domain d3bgxa_: 3bgx A: [172629]
      automated match to d1an5a_
      protein/RNA complex; complexed with mef, so4, tmp; mutant
  60. Domain(s) for 3bhl:
    1. 2578791Domain d3bhla_: 3bhl A: [172637]
      automated match to d1aiqa_
      protein/RNA complex; complexed with ndu, so4, thg
    2. 2578792Domain d3bhlb_: 3bhl B: [172638]
      automated match to d1aiqa_
      protein/RNA complex; complexed with ndu, so4, thg
  61. Domain(s) for 3bhr:
  62. Domain(s) for 3tms:
  63. Domain(s) for 4gev:
    1. 2578794Domain d4geva_: 4gev A: [192445]
      automated match to d2g8ma_
      complexed with cb3, umc
    2. 2578795Domain d4gevb_: 4gev B: [192446]
      automated match to d2g8ma_
      complexed with cb3, umc
  64. Domain(s) for 4isk:
    1. 2578818Domain d4iska1: 4isk A:2-264 [230059]
      Other proteins in same PDB: d4iska2, d4iskb2, d4iskc2, d4iskd2, d4iske2, d4iskf2, d4iskg2, d4iskh2
      automated match to d1f4ba_
      complexed with 1jy, mg, umc, ump
    2. 2578819Domain d4iskb1: 4isk B:2-264 [230056]
      Other proteins in same PDB: d4iska2, d4iskb2, d4iskc2, d4iskd2, d4iske2, d4iskf2, d4iskg2, d4iskh2
      automated match to d1f4ba_
      complexed with 1jy, mg, umc, ump
    3. 2578820Domain d4iskc1: 4isk C:2-264 [230058]
      Other proteins in same PDB: d4iska2, d4iskb2, d4iskc2, d4iskd2, d4iske2, d4iskf2, d4iskg2, d4iskh2
      automated match to d1f4ba_
      complexed with 1jy, mg, umc, ump
    4. 2578821Domain d4iskd1: 4isk D:2-264 [230057]
      Other proteins in same PDB: d4iska2, d4iskb2, d4iskc2, d4iskd2, d4iske2, d4iskf2, d4iskg2, d4iskh2
      automated match to d1f4ba_
      complexed with 1jy, mg, umc, ump
    5. 2578822Domain d4iske1: 4isk E:2-264 [230060]
      Other proteins in same PDB: d4iska2, d4iskb2, d4iskc2, d4iskd2, d4iske2, d4iskf2, d4iskg2, d4iskh2
      automated match to d1f4ba_
      complexed with 1jy, mg, umc, ump
    6. 2578823Domain d4iskf1: 4isk F:2-264 [230063]
      Other proteins in same PDB: d4iska2, d4iskb2, d4iskc2, d4iskd2, d4iske2, d4iskf2, d4iskg2, d4iskh2
      automated match to d1f4ba_
      complexed with 1jy, mg, umc, ump
    7. 2578824Domain d4iskg1: 4isk G:2-264 [230061]
      Other proteins in same PDB: d4iska2, d4iskb2, d4iskc2, d4iskd2, d4iske2, d4iskf2, d4iskg2, d4iskh2
      automated match to d1f4ba_
      complexed with 1jy, mg, umc, ump
    8. 2578825Domain d4iskh1: 4isk H:2-264 [230062]
      Other proteins in same PDB: d4iska2, d4iskb2, d4iskc2, d4iskd2, d4iske2, d4iskf2, d4iskg2, d4iskh2
      automated match to d1f4ba_
      complexed with 1jy, mg, umc, ump
  65. Domain(s) for 4iw5:
    1. 2578783Domain d4iw5a_: 4iw5 A: [307561]
      automated match to d1f4ba_
      complexed with cb3, mg, umc
    2. 2578784Domain d4iw5b_: 4iw5 B: [307562]
      automated match to d1f4ba_
      complexed with cb3, mg, umc
  66. Domain(s) for 4knz:
    1. 2578797Domain d4knza_: 4knz A: [192989]
      automated match to d2g8oa_
      complexed with cb3, na, umc
    2. 2578798Domain d4knzb_: 4knz B: [192990]
      automated match to d2g8oa_
      complexed with cb3, na, umc
  67. Domain(s) for 4lrr:
  68. Domain(s) for 6cdz:
    1. 2578898Domain d6cdza_: 6cdz A: [352049]
      automated match to d4iw5a_
      complexed with cb3, umc, ump; mutant
    2. 2578899Domain d6cdzb_: 6cdz B: [352051]
      automated match to d4iw5a_
      complexed with cb3, umc, ump; mutant
  69. Domain(s) for 6nnr:
    1. 2578785Domain d6nnra_: 6nnr A: [364276]
      automated match to d1kzia_
      complexed with cb3, epe, na, umc
    2. 2578786Domain d6nnrb_: 6nnr B: [364279]
      automated match to d1kzia_
      complexed with cb3, epe, na, umc
  70. Domain(s) for 7jx1:
    1. 2578826Domain d7jx1a_: 7jx1 A: [403371]
      automated match to d1kzia_
      complexed with po4, tmp, vla, vld
    2. 2578827Domain d7jx1b_: 7jx1 B: [403326]
      automated match to d1kzia_
      complexed with po4, tmp, vla, vld
  71. Domain(s) for 7jxf:
    1. 2578799Domain d7jxfa_: 7jxf A: [403404]
      automated match to d1kzia_
      complexed with 5hu, na, vmv, vnm
    2. 2578800Domain d7jxfb_: 7jxf B: [403481]
      automated match to d1kzia_
      complexed with 5hu, na, vmv, vnm

More info for Species Escherichia coli [TaxId:562] from d.117.1.1 Thymidylate synthase

Timeline for Species Escherichia coli [TaxId:562] from d.117.1.1 Thymidylate synthase: