SCOPe 2.05: Superfamily d.113.1: Nudix

Lineage for Superfamily d.113.1: Nudix

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.113: Nudix [55810] (1 superfamily)
   beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet
   contains beta-grasp motif

4. Superfamily d.113.1: Nudix [55811] (8 families)

Families:

1. d.113.1.1: MutT-like [55812] (17 proteins)

2. d.113.1.2: IPP isomerase-like [64369] (4 proteins)

3. d.113.1.3: MutY C-terminal domain-like [103211] (2 proteins)

4. d.113.1.4: NADH pyrophosphatase [103214] (1 protein)
   duplication: consists of two structurally similar domains separated by a rubredoxin-like zinc finger; the N-terminal domain has a rudiment Nudix fold, the C-terminal, probably catalytic, domain has the canonical fold

5. d.113.1.5: GDP-mannose mannosyl hydrolase NudD [111132] (2 proteins)

6. d.113.1.6: BT0354 N-terminal domain-like [143772] (3 proteins)
   accosiated with the C-terminal "winged helix" domain (46785)

7. d.113.1.7: mRNA decapping enzyme-like [143777] (2 proteins)
   part of Pfam PF00293

8. d.113.1.0: automated matches [191580] (1 protein)
   not a true family

More info for Superfamily d.113.1: Nudix

Timeline for Superfamily d.113.1: Nudix:

• Superfamily d.113.1: Nudix first appeared (with stable ids) in SCOP 1.55, called Superfamily d.113.1: Nucleoside triphosphate pyrophosphorylase (MutT)
  
• Superfamily d.113.1: Nudix appears in SCOPe 2.04
  
• Superfamily d.113.1: Nudix appears in SCOPe 2.06
  
• Superfamily d.113.1: Nudix appears in the current release, SCOPe 2.08