Lineage for Species: Methylophilus methylotrophus, strain w3a1 [TaxId: 17]

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2534513Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2534777Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families) (S)
    alpha-beta(2)-alpha(2)-beta(3)
  5. 2534778Family d.110.3.1: PYP-like [55786] (3 proteins)
  6. 2534779Protein Photoactive yellow protein, PYP [55787] (1 species)
  7. 2534780Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [55788] (82 PDB entries)
    Uniprot P16113

PDB entries in Species: Methylophilus methylotrophus, strain w3a1 [TaxId: 17]:

  1. Domain(s) for 1d7e:
  2. Domain(s) for 1f98:
  3. Domain(s) for 1f9i:
  4. Domain(s) for 1gsv:
  5. Domain(s) for 1gsw:
  6. Domain(s) for 1gsx:
  7. Domain(s) for 1kou:
  8. Domain(s) for 1nwz:
    • 2534781Domain d1nwza_: 1nwz A: [86370]
      ultra-high resolution structure
      complexed with hc4
  9. Domain(s) for 1odv:
    1. 2534849Domain d1odva_: 1odv A: [86887]
      1-25 deletion mutant
      complexed with hc4; mutant
    2. 2534850Domain d1odvb_: 1odv B: [86888]
      1-25 deletion mutant
      complexed with hc4; mutant
  10. Domain(s) for 1ot6:
  11. Domain(s) for 1ot9:
  12. Domain(s) for 1ota:
  13. Domain(s) for 1otb:
  14. Domain(s) for 1otd:
    1. 2534795Domain d1otda_: 1otd A: [93513]
      complexed with hc4
    2. 2534796Domain d1otdb_: 1otd B: [93514]
      complexed with hc4
  15. Domain(s) for 1ote:
  16. Domain(s) for 1oti:
  17. Domain(s) for 1s1y:
  18. Domain(s) for 1s1z:
  19. Domain(s) for 1s4r:
  20. Domain(s) for 1s4s:
  21. Domain(s) for 1t18:
  22. Domain(s) for 1t19:
  23. Domain(s) for 1t1a:
  24. Domain(s) for 1t1b:
  25. Domain(s) for 1t1c:
  26. Domain(s) for 1ts0:
  27. Domain(s) for 1ts6:
  28. Domain(s) for 1ts7:
  29. Domain(s) for 1ts8:
  30. Domain(s) for 1ugu:
  31. Domain(s) for 1uwn:
  32. Domain(s) for 1uwp:
  33. Domain(s) for 2d01:
  34. Domain(s) for 2d02:
  35. Domain(s) for 2i9v:
  36. Domain(s) for 2kx6:
  37. Domain(s) for 2phy:
  38. Domain(s) for 2pyp:
    • 2534842Domain d2pypa_: 2pyp A: [40902]
      photostationary state: 50% ground state, 50% bleached
      complexed with hc4
  39. Domain(s) for 2pyr:
  40. Domain(s) for 2qj5:
  41. Domain(s) for 2qj7:
  42. Domain(s) for 2qws:
  43. Domain(s) for 2zoh:
  44. Domain(s) for 2zoi:
  45. Domain(s) for 3phy:
  46. Domain(s) for 3pyp:
    • 2534784Domain d3pypa_: 3pyp A: [40897]
      cryotrapped early light cycle intermediate
      complexed with hc4
  47. Domain(s) for 3umd:
  48. Domain(s) for 3ume:
  49. Domain(s) for 3ve3:
  50. Domain(s) for 3ve4:
  51. Domain(s) for 4b9o:
  52. Domain(s) for 4bbt:
  53. Domain(s) for 4bbu:
  54. Domain(s) for 4bbv:
  55. Domain(s) for 4hy8:
  56. Domain(s) for 4i38:
  57. Domain(s) for 4i39:
  58. Domain(s) for 4i3a:
  59. Domain(s) for 4i3i:
  60. Domain(s) for 4i3j:
  61. Domain(s) for 4wl9:
  62. Domain(s) for 4wla:
  63. Domain(s) for 5gx9:
  64. Domain(s) for 5hd3:
  65. Domain(s) for 5hd5:
  66. Domain(s) for 5hdc:
  67. Domain(s) for 5hdd:
  68. Domain(s) for 5hds:
  69. Domain(s) for 6mhi:
  70. Domain(s) for 6mhn:
  71. Domain(s) for 6mkt:
  72. Domain(s) for 6mmd:
    1. 3069292Domain d6mmda_: 6mmd A: [369354]
      automated match to d1nwza_
      complexed with 2lt, hc4
    2. 3069301Domain d6mmdb_: 6mmd B: [369363]
      automated match to d1nwza_
      complexed with 2lt, hc4
  73. Domain(s) for 6p4i:
  74. Domain(s) for 6p5d:
  75. Domain(s) for 6p5e:
  76. Domain(s) for 6p5f:
  77. Domain(s) for 6p5g:
  78. Domain(s) for 6umy:
  79. Domain(s) for 6umz:
  80. Domain(s) for 6un0:
  81. Domain(s) for 6un2:
  82. Domain(s) for 7av6:

More info for Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] from d.110.3.1 Photoactive yellow protein, PYP

Timeline for Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] from d.110.3.1 Photoactive yellow protein, PYP: