SCOP 1.67: Protein: Photoactive yellow protein, PYP

Lineage for Protein: Photoactive yellow protein, PYP

Root: SCOP 1.67
Class d: Alpha and beta proteins (a+b) [53931] (260 folds)
Fold d.110: Profilin-like [55769] (7 superfamilies)
core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (6 families)
alpha-beta(2)-alpha(2)-beta(3)
Family d.110.3.1: PYP-like [55786] (2 proteins)
Protein Photoactive yellow protein, PYP [55787] (1 species)

Species:

Ectothiorhodospira halophila [TaxId:17] [55788] (24 PDB entries)
1. Domain for 1d7e:
  - Domain d1d7ea_: 1d7e A: [40900]
    the p65 crystal form
    complexed with hc4
2. Domain for 1f98:
  - Domain d1f98a_: 1f98 A: [40899]
    complexed with hc4; mutant
3. Domain for 1f9i:
  - Domain d1f9ia_: 1f9i A: [40898]
    complexed with hc4; mutant
4. Domain for 1gsv:
  - Domain d1gsva_: 1gsv A: [65537]
    complexed with hc4; mutant
5. Domain for 1gsw:
  - Domain d1gswa_: 1gsw A: [65538]
    complexed with hc4; mutant
6. Domain for 1gsx:
  - Domain d1gsxa_: 1gsx A: [65539]
    complexed with hc4; mutant
7. Domain for 1kou:
  - Domain d1koua_: 1kou A: [72832]
    complexed with but, dhc
8. Domain for 1nwz:
  - Domain d1nwza_: 1nwz A: [86370]
    ultra-high resolution structure
    complexed with hc4
9. Domains for 1odv:
  1. Domain d1odva_: 1odv A: [86887]
  2. Domain d1odvb_: 1odv B: [86888]
    1-25 deletion mutant
10. Domain for 1ot6:
  - Domain d1ot6a_: 1ot6 A: [93504]
    complexed with hc4; mutant
11. Domain for 1ot9:
  - Domain d1ot9a_: 1ot9 A: [93510]
    complexed with hc4
12. Domain for 1ota:
  - Domain d1otaa_: 1ota A: [93511]
    complexed with hc4; mutant
13. Domain for 1otb:
  - Domain d1otba_: 1otb A: [93512]
    complexed with hc4
14. Domains for 1otd:
  1. Domain d1otda_: 1otd A: [93513]
  2. Domain d1otdb_: 1otd B: [93514]
    complexed with hc4
15. Domain for 1ote:
  - Domain d1otea_: 1ote A: [93515]
    complexed with hc4; mutant
16. Domain for 1oti:
  - Domain d1otia_: 1oti A: [93516]
    complexed with hc4; mutant
17. Domain for 1s4r:
  - Domain d1s4ra_: 1s4r A: [98508]
    complexed with hc4
18. Domain for 1s4s:
  - Domain d1s4sa_: 1s4s A: [98509]
    complexed with hc4
19. Domain for 1uwn:
  - Domain d1uwnx_: 1uwn X: [100127]
    complexed with hc4, so4
20. Domain for 2phy:
  - Domain d2phy__: 2phy - [40901]
    complexed with hc4
21. Domain for 2pyp:
  - Domain d2pyp__: 2pyp - [40902]
    photostationary state: 50% ground state, 50% bleached
    complexed with hc4
22. Domain for 2pyr:
  - Domain d2pyr__: 2pyr - [40903]
    complexed with hc4
23. Domain for 3phy:
  - Domain d3phy__: 3phy - [40904]
    dark state (unbleached)
    complexed with hc4
24. Domain for 3pyp:
  - Domain d3pyp__: 3pyp - [40897]
    cryotrapped early light cycle intermediate
    complexed with hc4

More info for Protein Photoactive yellow protein, PYP from d.110.3.1: PYP-like

Timeline for Protein Photoactive yellow protein, PYP from d.110.3.1: PYP-like:

Protein Photoactive yellow protein, PYP from d.110.3.1: PYP-like first appeared (with stable ids) in SCOP 1.55, called Protein Photoactive yellow protein, PYP from d.110.3.1: Photoactive yellow protein, PYP
Protein Photoactive yellow protein, PYP from d.110.3.1: PYP-like appears in SCOP 1.65
Protein Photoactive yellow protein, PYP from d.110.3.1: PYP-like appears in SCOP 1.69
Protein Photoactive yellow protein, PYP from d.110.3.1: PYP-like appears in the current release, SCOPe 2.08