SCOPe 2.04: Family d.110.2.1: GAF domain

Lineage for Family d.110.2.1: GAF domain

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.110: Profilin-like [55769] (10 superfamilies)
   core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

4. Superfamily d.110.2: GAF domain-like [55781] (5 families)
   alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654

5. Family d.110.2.1: GAF domain [55782] (8 proteins)

Proteins:

1. 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains [82760] (1 species)
   GAF B is the nucleotide binding domain; the two domains are connected with a long helix;

   • Species Mouse (Mus musculus) [TaxId:10090] [82761] (1 PDB entry)

2. Bacteriophytochrome BphP [160661] (3 species)

   1. Species Deinococcus radiodurans [TaxId:1299] [160663] (3 PDB entries)
      Uniprot Q9RZA4 135-321! Uniprot Q9RZA4 137-325

   2. Species Deinococcus radiodurans [TaxId:243230] [258261] (1 PDB entry)

   3. Species Pseudomonas aeruginosa [TaxId:287] [160662] (5 PDB entries)
      Uniprot Q9HWR3 118-309

3. Hypothetical protein YebR [103182] (1 species)

   • Species Escherichia coli [TaxId:562] [103183] (1 PDB entry)

4. Hypothetical protein ykl069wp [55783] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55784] (2 PDB entries)

5. Phytochrome-like protein Cph1 [160657] (1 species)

   • Species Synechocystis sp. PCC 6803 [TaxId:1148] [160658] (1 PDB entry)
     Uniprot Q55168 131-326

6. Sensor protein CYB2465 [160659] (2 species)

   1. Species Synechococcus sp. [TaxId:1131] [160660] (4 PDB entries)
      Uniprot Q2JIZ5 31-200

   2. Species Synechococcus sp. [TaxId:321332] [255356] (1 PDB entry)

7. Sensor protein PhyB2 [160655] (1 species)

   • Species Rhodopseudomonas palustris [TaxId:1076] [160656] (1 PDB entry)
     Uniprot Q6N5G2 140-333

8. automated matches [227076] (2 species)
   not a true protein

   1. Species Deinococcus radiodurans [TaxId:1299] [226274] (5 PDB entries)

   2. Species Deinococcus radiodurans [TaxId:243230] [230054] (1 PDB entry)

More info for Family d.110.2.1: GAF domain

Timeline for Family d.110.2.1: GAF domain:

• Family d.110.2.1: GAF domain first appeared (with stable ids) in SCOP 1.55
  
• Family d.110.2.1: GAF domain appears in SCOPe 2.03
  
• Family d.110.2.1: GAF domain appears in SCOPe 2.05
  
• Family d.110.2.1: GAF domain appears in the current release, SCOPe 2.08