SCOP 1.65: Protein: Aspartyl-tRNA synthetase (AspRS)

Lineage for Protein: Aspartyl-tRNA synthetase (AspRS)

Root: SCOP 1.65
Class d: Alpha and beta proteins (a+b) [53931] (234 folds)
Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
contains large mixed beta-sheet
Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (2 families)
Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain [55682] (12 proteins)
Protein Aspartyl-tRNA synthetase (AspRS) [55696] (5 species)

Species:

Archaeon Pyrococcus kodakaraensis [TaxId:311400] [55698] (1 PDB entry)
- Domains for 1b8a:
  1. Domain d1b8aa2: 1b8a A:104-438 [40765]
    Other proteins in same PDB: d1b8aa1, d1b8ab1
  2. Domain d1b8ab2: 1b8a B:1104-1438 [40766]
    Other proteins in same PDB: d1b8aa1, d1b8ab1
    complexed with atp, mn
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55697] (3 PDB entries)
1. Domains for 1asy:
  1. Domain d1asya2: 1asy A:205-557 [40763]
    Other proteins in same PDB: d1asya1, d1asyb1
  2. Domain d1asyb2: 1asy B:205-557 [40764]
    Other proteins in same PDB: d1asya1, d1asyb1
    protein/tRNA complex
2. Domains for 1asz:
  1. Domain d1asza2: 1asz A:205-557 [40761]
    Other proteins in same PDB: d1asza1, d1aszb1
  2. Domain d1aszb2: 1asz B:205-557 [40762]
    Other proteins in same PDB: d1asza1, d1aszb1
    protein/tRNA complex; complexed with atp
3. Domain for 1eov:
  - Domain d1eova2: 1eov A:205-557 [40760]
    Other proteins in same PDB: d1eova1
Escherichia coli [TaxId:562] [55699] (3 PDB entries)
1. Domain for 1c0a:
  - Domain d1c0aa3: 1c0a A:107-287,A:421-585 [40767]
    Other proteins in same PDB: d1c0aa1, d1c0aa2
2. Domains for 1eqr:
  1. Domain d1eqra3: 1eqr A:107-287,A:421-590 [40768]
    Other proteins in same PDB: d1eqra1, d1eqra2, d1eqrb1, d1eqrb2, d1eqrc1, d1eqrc2
  2. Domain d1eqrb3: 1eqr B:107-287,B:421-590 [40769]
    Other proteins in same PDB: d1eqra1, d1eqra2, d1eqrb1, d1eqrb2, d1eqrc1, d1eqrc2
  3. Domain d1eqrc3: 1eqr C:107-287,C:421-590 [40770]
    Other proteins in same PDB: d1eqra1, d1eqra2, d1eqrb1, d1eqrb2, d1eqrc1, d1eqrc2
    complexed with mg
3. Domains for 1il2:
  1. Domain d1il2a3: 1il2 A:107-287,A:421-585 [66195]
    Other proteins in same PDB: d1il2a1, d1il2a2, d1il2b1, d1il2b2
  2. Domain d1il2b3: 1il2 B:1107-1287,B:1421-1585 [66198]
    Other proteins in same PDB: d1il2a1, d1il2a2, d1il2b1, d1il2b2
    complexed with 1mg, 5mc, 5mu, amo, h2u, psu, so4
Thermus thermophilus, AspRS-1 [TaxId:274] [55700] (3 PDB entries)
1. Domains for 1efw:
  1. Domain d1efwa3: 1efw A:105-294,A:415-580 [40773]
    Other proteins in same PDB: d1efwa1, d1efwa2, d1efwb1, d1efwb2
  2. Domain d1efwb3: 1efw B:105-294,B:415-580 [40774]
    Other proteins in same PDB: d1efwa1, d1efwa2, d1efwb1, d1efwb2
    protein/RNA complex; complexed with 2ma, 4su, 5mu, g7m, h2u, psu, quo
2. Domains for 1g51:
  1. Domain d1g51a3: 1g51 A:105-294,A:415-580 [40771]
    Other proteins in same PDB: d1g51a1, d1g51a2, d1g51b1, d1g51b2
  2. Domain d1g51b3: 1g51 B:1105-1294,B:1415-1580 [40772]
    Other proteins in same PDB: d1g51a1, d1g51a2, d1g51b1, d1g51b2
    complexed with amo, amp, so4
3. Domains for 1l0w:
  1. Domain d1l0wa3: 1l0w A:105-294,A:415-580 [73428]
    Other proteins in same PDB: d1l0wa1, d1l0wa2, d1l0wb1, d1l0wb2
  2. Domain d1l0wb3: 1l0w B:1105-1294,B:1415-1580 [73431]
    Other proteins in same PDB: d1l0wa1, d1l0wa2, d1l0wb1, d1l0wb2
Thermus thermophilus, AspRS-2 [TaxId:274] [90008] (1 PDB entry)
non-discriminating and archaeal-type enzyme
- Domains for 1n9w:
  1. Domain d1n9wa2: 1n9w A:111-414 [85474]
    Other proteins in same PDB: d1n9wa1, d1n9wb1
  2. Domain d1n9wb2: 1n9w B:111-414 [85476]
    Other proteins in same PDB: d1n9wa1, d1n9wb1

More info for Protein Aspartyl-tRNA synthetase (AspRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain

Timeline for Protein Aspartyl-tRNA synthetase (AspRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain:

Protein Aspartyl-tRNA synthetase (AspRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain first appeared (with stable ids) in SCOP 1.55
Protein Aspartyl-tRNA synthetase (AspRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain appears in SCOP 1.63
Protein Aspartyl-tRNA synthetase (AspRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain is called Protein Aspartyl-tRNA synthetase (AspRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain in SCOP 1.67
Protein Aspartyl-tRNA synthetase (AspRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain appears in the current release, SCOPe 2.08, called Protein Aspartyl-tRNA synthetase (AspRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain