SCOPe 2.04: Protein: Lysyl-tRNA synthetase (LysRS)

Lineage for Protein: Lysyl-tRNA synthetase (LysRS)

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
contains large mixed beta-sheet
Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families)
Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain [55682] (16 proteins)
Protein Lysyl-tRNA synthetase (LysRS) [55685] (3 species)
contains an insertion of LEM/SAP-like HeH motif, residues 337-379

Species:

Escherichia coli, gene lysS [TaxId:562] [55687] (2 PDB entries)
1. Domain for 1bbu:
  - Domain d1bbua2: 1bbu A:161-502 [40721]
    Other proteins in same PDB: d1bbua1
    protein/RNA complex; complexed with lys
2. Domain for 1bbw:
  - Domain d1bbwa2: 1bbw A:161-502 [40722]
    Other proteins in same PDB: d1bbwa1
Escherichia coli, gene lysU [TaxId:562] [55686] (5 PDB entries)
1. Domain for 1e1o:
  - Domain d1e1oa2: 1e1o A:161-502 [40714]
    Other proteins in same PDB: d1e1oa1
    protein/RNA complex; complexed with gol, lys
2. Domain for 1e1t:
  - Domain d1e1ta2: 1e1t A:161-502 [40720]
    Other proteins in same PDB: d1e1ta1
    protein/RNA complex; complexed with gol, lad, mg, pop
3. Domain for 1e22:
  - Domain d1e22a2: 1e22 A:161-502 [40715]
    Other proteins in same PDB: d1e22a1
    protein/RNA complex; complexed with acp, gol, lys, mg
4. Domain for 1e24:
  - Domain d1e24a2: 1e24 A:161-502 [40716]
    Other proteins in same PDB: d1e24a1
    protein/RNA complex; complexed with atp, gol, lys, mn
5. Domains for 1lyl:
  1. Domain d1lyla2: 1lyl A:161-502 [40717]
    Other proteins in same PDB: d1lyla1, d1lylb1, d1lylc1
    protein/RNA complex; complexed with lys
  2. Domain d1lylb2: 1lyl B:154-502 [40718]
    Other proteins in same PDB: d1lyla1, d1lylb1, d1lylc1
    protein/RNA complex; complexed with lys
  3. Domain d1lylc2: 1lyl C:161-502 [40719]
    Other proteins in same PDB: d1lyla1, d1lylb1, d1lylc1
    protein/RNA complex; complexed with lys
Geobacillus stearothermophilus [TaxId:1422] [225969] (1 PDB entry)
- Domains for 3a74:
  1. Domain d3a74a2: 3a74 A:146-492 [208134]
    Other proteins in same PDB: d3a74a1, d3a74b1, d3a74c1, d3a74d1
    automated match to d1bbua2
    protein/RNA complex; complexed with b4p, lyn, mg
  2. Domain d3a74b2: 3a74 B:146-492 [208136]
    Other proteins in same PDB: d3a74a1, d3a74b1, d3a74c1, d3a74d1
    automated match to d1bbua2
    protein/RNA complex; complexed with b4p, lyn, mg
  3. Domain d3a74c2: 3a74 C:146-492 [208138]
    Other proteins in same PDB: d3a74a1, d3a74b1, d3a74c1, d3a74d1
    automated match to d1bbua2
    protein/RNA complex; complexed with b4p, lyn, mg
  4. Domain d3a74d2: 3a74 D:146-492 [208140]
    Other proteins in same PDB: d3a74a1, d3a74b1, d3a74c1, d3a74d1
    automated match to d1bbua2
    protein/RNA complex; complexed with b4p, lyn, mg

More info for Protein Lysyl-tRNA synthetase (LysRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Timeline for Protein Lysyl-tRNA synthetase (LysRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain:

Protein Lysyl-tRNA synthetase (LysRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein Lysyl-tRNA synthetase (LysRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain
Protein Lysyl-tRNA synthetase (LysRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain appears in SCOPe 2.03
Protein Lysyl-tRNA synthetase (LysRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain appears in SCOPe 2.05
Protein Lysyl-tRNA synthetase (LysRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain appears in the current release, SCOPe 2.08