Lineage for Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

  1. Root: SCOP 1.71
  2. 595667Class d: Alpha and beta proteins (a+b) [53931] (286 folds)
  3. 608836Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
    contains large mixed beta-sheet
  4. 608837Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (2 families) (S)
  5. 608838Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain [55682] (15 proteins)

Proteins:

  1. 608839Alanyl-tRNA synthetase (AlaRS) [103155] (1 species)
  2. 608842Asparagine synthetase [55705] (1 species)
  3. 608848Aspartyl-tRNA synthetase (AspRS) [55696] (5 species)
    1. 608849Species Archaeon Pyrococcus kodakaraensis [TaxId:311400] [55698] (1 PDB entry)
    2. 608852Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55697] (3 PDB entries)
    3. 608858Species Escherichia coli [TaxId:562] [55699] (3 PDB entries)
    4. 608865Species Thermus thermophilus, AspRS-1 [TaxId:274] [55700] (3 PDB entries)
    5. 608872Species Thermus thermophilus, AspRS-2 [TaxId:274] [90008] (1 PDB entry)
      non-discriminating and archaeal-type enzyme
  4. 608875ATP phosphoribosyltransferase regulatory subunit HisZ [118058] (1 species)
    shares histidine-binding site with the HisRS catalytic domain
  5. 608881Glycyl-tRNA synthetase (GlyRS) [55692] (1 species)
  6. 608889Glycyl-tRNA synthetase (GlyRS) alpha chain [75504] (1 species)
  7. 608893Histidyl-tRNA synthetase (HisRS) [55688] (3 species)
    1. 608894Species Escherichia coli [TaxId:562] [55689] (3 PDB entries)
    2. 608907Species Staphylococcus aureus [TaxId:1280] [55690] (1 PDB entry)
    3. 608910Species Thermus thermophilus [TaxId:274] [55691] (3 PDB entries)
  8. 608920Hypothetical protein PF1951 [103157] (1 species)
  9. 608923Lysyl-tRNA synthetase (LysRS) [55685] (2 species)
    contains an insertion of LEM/SAP-like HeH motif, residues 337-379
    1. 608924Species Escherichia coli, gene lysS [TaxId:562] [55687] (2 PDB entries)
    2. 608927Species Escherichia coli, gene lysU [TaxId:562] [55686] (5 PDB entries)
  10. 608935Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS [55701] (1 species)
  11. 608942Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain [55703] (1 species)
    this domain is non-catalytic
  12. 608949Prolyl-tRNA synthetase (ProRS) [64347] (3 species)
    1. 608950Species Arhaeon (Methanocaldococcus janaschii) [90010] (1 PDB entry)
    2. 608955Species Arhaeon (Methanothermobacter thermautotrophicus) [TaxId:145262] [90009] (4 PDB entries)
    3. 608960Species Thermus thermophilus [TaxId:274] [64348] (4 PDB entries)
  13. 608973Seryl-tRNA synthetase (SerRS) [55683] (1 species)
  14. 608983The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain [64349] (1 species)
  15. 608993Threonyl-tRNA synthetase (ThrRS) [55694] (2 species)
    1. 608994Species Escherichia coli [TaxId:562] [55695] (5 PDB entries)
    2. 609012Species Staphylococcus aureus [TaxId:1280] [103154] (2 PDB entries)

More info for Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Timeline for Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain: