SCOP 1.65: Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain

Lineage for Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain

1. Root: SCOP 1.65

2. Class d: Alpha and beta proteins (a+b) [53931] (234 folds)

3. Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
   contains large mixed beta-sheet

4. Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (2 families)

5. Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain [55682] (12 proteins)

Proteins:

1. Asparagine synthetase [55705] (1 species)

   • Species Escherichia coli [TaxId:562] [55706] (2 PDB entries)

2. Aspartyl-tRNA synthetase (AspRS) [55696] (5 species)

   1. Species Archaeon Pyrococcus kodakaraensis [TaxId:311400] [55698] (1 PDB entry)

   2. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55697] (3 PDB entries)

   3. Species Escherichia coli [TaxId:562] [55699] (3 PDB entries)

   4. Species Thermus thermophilus, AspRS-1 [TaxId:274] [55700] (3 PDB entries)

   5. Species Thermus thermophilus, AspRS-2 [TaxId:274] [90008] (1 PDB entry)
      non-discriminating and archaeal-type enzyme

3. Glycyl-tRNA synthetase (GlyRS) [55692] (1 species)

   • Species Thermus thermophilus [TaxId:274] [55693] (3 PDB entries)

4. Glycyl-tRNA synthetase (GlyRS) alpha chain [75504] (1 species)

   • Species Thermotoga maritima [TaxId:243274] [75505] (1 PDB entry)
     TM0216

5. Histidyl-tRNA synthetase (HisRS) [55688] (3 species)

   1. Species Escherichia coli [TaxId:562] [55689] (3 PDB entries)

   2. Species Staphylococcus aureus [TaxId:1280] [55690] (1 PDB entry)

   3. Species Thermus thermophilus [TaxId:274] [55691] (3 PDB entries)

6. Lysyl-tRNA synthetase (LysRS) [55685] (2 species)
   contains an insertion of LEM/SAP-like HeH motif, residues 337-379

   1. Species Escherichia coli, gene lysS [TaxId:562] [55687] (2 PDB entries)

   2. Species Escherichia coli, gene lysU [TaxId:562] [55686] (5 PDB entries)

7. Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS [55701] (1 species)

   • Species Thermus thermophilus and (Thermus aquaticus) [55702] (5 PDB entries)

8. Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain [55703] (1 species)
   this domain is non-catalytic

   • Species Thermus thermophilus (Thermus aquaticus) [55704] (5 PDB entries)

9. Prolyl-tRNA synthetase (ProRS) [64347] (3 species)

   1. Species Arhaeon (Methanocaldococcus janaschii) [90010] (1 PDB entry)

   2. Species Arhaeon (Methanothermobacter thermautotrophicus) [TaxId:145262] [90009] (4 PDB entries)

   3. Species Thermus thermophilus [TaxId:274] [64348] (4 PDB entries)

10. Seryl-tRNA synthetase (SerRS) [55683] (1 species)

    • Species Thermus thermophilus, strain hb27 [TaxId:274] [55684] (4 PDB entries)

11. The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain [64349] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [64350] (2 PDB entries)

12. Threonyl-tRNA synthetase (ThrRS) [55694] (1 species)

    • Species Escherichia coli [TaxId:562] [55695] (5 PDB entries)

More info for Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain

Timeline for Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain:

• Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain first appeared (with stable ids) in SCOP 1.55
  
• Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain appears in SCOP 1.63
  
• Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain is called Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain in SCOP 1.67
  
• Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain appears in the current release, SCOPe 2.08, called Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain