SCOPe 2.01: Protein: VMA1-derived endonuclease (VDE) PI-SceI

Lineage for Protein: VMA1-derived endonuclease (VDE) PI-SceI

Root: SCOPe 2.01
Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
Fold d.95: Homing endonuclease-like [55603] (2 superfamilies)
alpha-beta(2)-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel sheet 1243
Superfamily d.95.2: Homing endonucleases [55608] (2 families)
Family d.95.2.2: Intein endonuclease [55614] (2 proteins)
duplication: contains tandem repeat of this fold
Protein VMA1-derived endonuclease (VDE) PI-SceI [55615] (1 species)
homing endonuclease with protein splicing activity

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55616] (7 PDB entries)
Uniprot P17255 284-737
1. Domains for 1dfa:
  1. Domain d1dfaa2: 1dfa A:181-298 [40575]
    Other proteins in same PDB: d1dfaa1
  2. Domain d1dfaa3: 1dfa A:299-415 [40576]
    Other proteins in same PDB: d1dfaa1
2. Domains for 1ef0:
  1. Domain d1ef0a2: 1ef0 A:181-298 [40577]
    Other proteins in same PDB: d1ef0a1, d1ef0b1
    complexed with zn
  2. Domain d1ef0a3: 1ef0 A:299-415 [40578]
    Other proteins in same PDB: d1ef0a1, d1ef0b1
    complexed with zn
  3. Domain d1ef0b2: 1ef0 B:181-298 [40579]
    Other proteins in same PDB: d1ef0a1, d1ef0b1
    complexed with zn
  4. Domain d1ef0b3: 1ef0 B:299-415 [40580]
    Other proteins in same PDB: d1ef0a1, d1ef0b1
    complexed with zn
3. Domains for 1jva:
  1. Domain d1jvaa2: 1jva A:464-581 [77176]
    Other proteins in same PDB: d1jvaa1, d1jvab1
  2. Domain d1jvaa3: 1jva A:582-698 [77177]
    Other proteins in same PDB: d1jvaa1, d1jvab1
  3. Domain d1jvab2: 1jva B:464-581 [77179]
    Other proteins in same PDB: d1jvaa1, d1jvab1
  4. Domain d1jvab3: 1jva B:582-698 [77180]
    Other proteins in same PDB: d1jvaa1, d1jvab1
4. Domains for 1lws:
  1. Domain d1lwsa2: 1lws A:181-298 [78276]
    Other proteins in same PDB: d1lwsa1
    protein/DNA complex; complexed with ca
  2. Domain d1lwsa3: 1lws A:299-415 [78277]
    Other proteins in same PDB: d1lwsa1
    protein/DNA complex; complexed with ca
5. Domains for 1lwt:
  1. Domain d1lwta2: 1lwt A:181-298 [78279]
    Other proteins in same PDB: d1lwta1
    protein/DNA complex
  2. Domain d1lwta3: 1lwt A:299-415 [78280]
    Other proteins in same PDB: d1lwta1
    protein/DNA complex
6. Domains for 1um2:
  1. Domain d1um2a2: 1um2 A:464-581 [107947]
    Other proteins in same PDB: d1um2a1, d1um2b1
  2. Domain d1um2a3: 1um2 A:582-698 [107948]
    Other proteins in same PDB: d1um2a1, d1um2b1
  3. Domain d1um2b2: 1um2 B:464-581 [107950]
    Other proteins in same PDB: d1um2a1, d1um2b1
  4. Domain d1um2b3: 1um2 B:582-698 [107951]
    Other proteins in same PDB: d1um2a1, d1um2b1
7. Domains for 1vde:
  1. Domain d1vdea2: 1vde A:181-298 [40581]
    Other proteins in same PDB: d1vdea1, d1vdeb1
  2. Domain d1vdea3: 1vde A:299-415 [40582]
    Other proteins in same PDB: d1vdea1, d1vdeb1
  3. Domain d1vdeb2: 1vde B:181-298 [40583]
    Other proteins in same PDB: d1vdea1, d1vdeb1
  4. Domain d1vdeb3: 1vde B:299-415 [40584]
    Other proteins in same PDB: d1vdea1, d1vdeb1

More info for Protein VMA1-derived endonuclease (VDE) PI-SceI from d.95.2.2: Intein endonuclease

Timeline for Protein VMA1-derived endonuclease (VDE) PI-SceI from d.95.2.2: Intein endonuclease:

Protein VMA1-derived endonuclease (VDE) PI-SceI from d.95.2.2: Intein endonuclease first appeared (with stable ids) in SCOP 1.55, called Protein PI-SceI from d.95.2.2: Intein endonuclease
Protein VMA1-derived endonuclease (VDE) PI-SceI from d.95.2.2: Intein endonuclease appears in SCOP 1.75
Protein VMA1-derived endonuclease (VDE) PI-SceI from d.95.2.2: Intein endonuclease appears in SCOPe 2.02
Protein VMA1-derived endonuclease (VDE) PI-SceI from d.95.2.2: Intein endonuclease appears in the current release, SCOPe 2.08