SCOPe 2.05: Family d.92.1.11: Matrix metalloproteases, catalytic domain

Lineage for Family d.92.1.11: Matrix metalloproteases, catalytic domain

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.92: Zincin-like [55485] (2 superfamilies)
   contains mixed beta sheet with connection over free side of the sheet

4. Superfamily d.92.1: Metalloproteases ("zincins"), catalytic domain [55486] (18 families)

5. Family d.92.1.11: Matrix metalloproteases, catalytic domain [55528] (14 proteins)

Proteins:

1. Collagenase-3 (MMP-13) [55540] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [55541] (40 PDB entries)

   2. Species Mouse (Mus musculus) [TaxId:10090] [55542] (1 PDB entry)

2. Fibroblast collagenase (MMP-1) [55529] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [55530] (13 PDB entries)
      Uniprot P03956 32-466

   2. Species Pig (Sus scrofa) [TaxId:9823] [55531] (1 PDB entry)

3. Gelatinase A [55534] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [55535] (4 PDB entries)

4. Gelatinase B (MMP-9) [75496] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [75497] (15 PDB entries)

5. Macrophage elastase (MMP-12) [69780] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [69781] (36 PDB entries)
     Uniprot P39900 106-263 ! Uniprot P39900 106-264

6. Matrilysin (MMP-7) [55538] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [55539] (3 PDB entries)

7. Matrix metalloproteinase-16 (MMP-16) [103130] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [103131] (1 PDB entry)

8. Membrane-type matrix metalloproteinase (CDMT1-MMP) [55543] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [55544] (2 PDB entries)

9. MMP-2 [69778] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [69779] (1 PDB entry)

10. Neutrophil collagenase (MMP-8) [55532] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [55533] (23 PDB entries)

11. Stromelysin-1 (MMP-3) [55536] (1 species)

    • Species Human (Homo sapiens), fibroblast [TaxId:9606] [55537] (40 PDB entries)

12. Stromelysin-2 (MMP-10) [103128] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [103129] (1 PDB entry)

13. Stromelysin-3 (MMP-11) [64341] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [64342] (1 PDB entry)

14. automated matches [190182] (1 species)
    not a true protein

    • Species Human (Homo sapiens) [TaxId:9606] [186920] (32 PDB entries)

More info for Family d.92.1.11: Matrix metalloproteases, catalytic domain

Timeline for Family d.92.1.11: Matrix metalloproteases, catalytic domain:

• Family d.92.1.11: Matrix metalloproteases, catalytic domain first appeared (with stable ids) in SCOP 1.55
  
• Family d.92.1.11: Matrix metalloproteases, catalytic domain appears in SCOPe 2.04
  
• Family d.92.1.11: Matrix metalloproteases, catalytic domain appears in SCOPe 2.06
  
• Family d.92.1.11: Matrix metalloproteases, catalytic domain appears in the current release, SCOPe 2.08