SCOPe 2.06: Protein: The origin DNA-binding domain of SV40 T-antigen

Lineage for Protein: The origin DNA-binding domain of SV40 T-antigen

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325
Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (6 families)
Family d.89.1.1: The origin DNA-binding domain of SV40 T-antigen [55465] (2 proteins)
Protein The origin DNA-binding domain of SV40 T-antigen [55466] (2 species)

Species:

Jc polyomavirus [TaxId:10632] [237285] (4 PDB entries)
1. Domain for 4lif:
  - Domain d4lifa_: 4lif A: [237286]
    automated match to d1tbda_
    complexed with so4
2. Domains for 4lmd:
  1. Domain d4lmda_: 4lmd A: [238171]
    automated match to d4lifa_
    complexed with flc, gol
  2. Domain d4lmdb_: 4lmd B: [238170]
    automated match to d4lifa_
    complexed with flc, gol
3. Domain for 4nbp:
  - Domain d4nbpa_: 4nbp A: [238252]
    automated match to d4lifa_
    complexed with tla
4. Domain for 5cyn:
  - Domain d5cyna_: 5cyn A: [279890]
    automated match to d4lmdb_
    complexed with edo; mutant
Simian virus 40, Sv40 [TaxId:10633] [55467] (10 PDB entries)
1. Domain for 1tbd:
  - Domain d1tbda1: 1tbd A:3-132 [40240]
    Other proteins in same PDB: d1tbda2, d1tbda3
2. Domain for 2fuf:
  - Domain d2fufa_: 2fuf A: [134120]
    automated match to d1tbd__
    complexed with flc
3. Domains for 2if9:
  1. Domain d2if9a2: 2if9 A:131-260 [137327]
    Other proteins in same PDB: d2if9a3, d2if9b3
    automated match to d1tbd__
  2. Domain d2if9b2: 2if9 B:131-260 [137328]
    Other proteins in same PDB: d2if9a3, d2if9b3
    automated match to d1tbd__
4. Domains for 2ipr:
  1. Domain d2ipra_: 2ipr A: [137583]
    automated match to d1tbd__
  2. Domain d2iprb_: 2ipr B: [137584]
    automated match to d1tbd__
5. Domains for 2itj:
  1. Domain d2itja_: 2itj A: [137640]
    automated match to d1tbd__
  2. Domain d2itjb_: 2itj B: [137641]
    automated match to d1tbd__
6. Domains for 2itl:
  1. Domain d2itla_: 2itl A: [137644]
    automated match to d1tbd__
    protein/DNA complex
  2. Domain d2itlb_: 2itl B: [137645]
    automated match to d1tbd__
    protein/DNA complex
7. Domain for 2nl8:
  - Domain d2nl8a_: 2nl8 A: [166265]
    automated match to d1tbda_
    protein/DNA complex
8. Domains for 2ntc:
  1. Domain d2ntca_: 2ntc A: [138577]
    automated match to d1tbd__
    protein/DNA complex
  2. Domain d2ntcb_: 2ntc B: [138578]
    automated match to d1tbd__
    protein/DNA complex
9. Domain for 2tbd:
  - Domain d2tbda1: 2tbd A:3-132 [40241]
    Other proteins in same PDB: d2tbda2, d2tbda3
10. Domain for 3qk2:
  - Domain d3qk2a1: 3qk2 A:131-260 [184457]
    Other proteins in same PDB: d3qk2a2, d3qk2a3
    automated match to d1tbda_
    complexed with scn

More info for Protein The origin DNA-binding domain of SV40 T-antigen from d.89.1.1: The origin DNA-binding domain of SV40 T-antigen

Timeline for Protein The origin DNA-binding domain of SV40 T-antigen from d.89.1.1: The origin DNA-binding domain of SV40 T-antigen:

Protein The origin DNA-binding domain of SV40 T-antigen from d.89.1.1: The origin DNA-binding domain of SV40 T-antigen first appeared (with stable ids) in SCOP 1.55
Protein The origin DNA-binding domain of SV40 T-antigen from d.89.1.1: The origin DNA-binding domain of SV40 T-antigen appears in SCOPe 2.05
Protein The origin DNA-binding domain of SV40 T-antigen from d.89.1.1: The origin DNA-binding domain of SV40 T-antigen appears in SCOPe 2.07
Protein The origin DNA-binding domain of SV40 T-antigen from d.89.1.1: The origin DNA-binding domain of SV40 T-antigen appears in the current release, SCOPe 2.08