SCOP 1.63: Protein: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)

Lineage for Protein: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)

Root: SCOP 1.63
Class d: Alpha and beta proteins (a+b) [53931] (224 folds)
Fold d.81: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55346] (1 superfamily)
core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1
Superfamily d.81.1: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55347] (5 families)
N-terminal domain is the classic Rossmann-fold
Family d.81.1.1: GAPDH-like [55348] (2 proteins)
has many additional secondary structures
Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [55349] (13 species)

Species:

Archaeon Methanothermus fervidus [TaxId:2180] [55355] (1 PDB entry)
- Domains for 1cf2:
  1. Domain d1cf2o2: 1cf2 O:139-303 [39909]
    Other proteins in same PDB: d1cf2o1, d1cf2p1, d1cf2q1, d1cf2r1
  2. Domain d1cf2p2: 1cf2 P:139-303 [39911]
    Other proteins in same PDB: d1cf2o1, d1cf2p1, d1cf2q1, d1cf2r1
  3. Domain d1cf2q2: 1cf2 Q:139-303 [39910]
    Other proteins in same PDB: d1cf2o1, d1cf2p1, d1cf2q1, d1cf2r1
  4. Domain d1cf2r2: 1cf2 R:139-303 [39912]
    Other proteins in same PDB: d1cf2o1, d1cf2p1, d1cf2q1, d1cf2r1
    complexed with nap, so4
Archaeon Sulfolobus solfataricus [TaxId:2287] [55354] (1 PDB entry)
- Domains for 1b7g:
  1. Domain d1b7go2: 1b7g O:139-300 [39907]
    Other proteins in same PDB: d1b7go1, d1b7gq1
  2. Domain d1b7gq2: 1b7g Q:139-300 [39908]
    Other proteins in same PDB: d1b7go1, d1b7gq1
    CASP3
    complexed with so4; mutant
Bacillus stearothermophilus, nca 1503 [TaxId:1422] [55351] (6 PDB entries)
1. Domains for 1dbv:
  1. Domain d1dbvo2: 1dbv O:149-312 [39881]
    Other proteins in same PDB: d1dbvo1, d1dbvp1, d1dbvq1, d1dbvr1
  2. Domain d1dbvp2: 1dbv P:149-312 [39882]
    Other proteins in same PDB: d1dbvo1, d1dbvp1, d1dbvq1, d1dbvr1
  3. Domain d1dbvq2: 1dbv Q:149-312 [39883]
    Other proteins in same PDB: d1dbvo1, d1dbvp1, d1dbvq1, d1dbvr1
  4. Domain d1dbvr2: 1dbv R:149-312 [39884]
    Other proteins in same PDB: d1dbvo1, d1dbvp1, d1dbvq1, d1dbvr1
    complexed with nad, so4; mutant
2. Domains for 1gd1:
  1. Domain d1gd1o2: 1gd1 O:149-312 [39877]
    Other proteins in same PDB: d1gd1o1, d1gd1p1, d1gd1q1, d1gd1r1
  2. Domain d1gd1p2: 1gd1 P:149-312 [39878]
    Other proteins in same PDB: d1gd1o1, d1gd1p1, d1gd1q1, d1gd1r1
  3. Domain d1gd1q2: 1gd1 Q:149-312 [39879]
    Other proteins in same PDB: d1gd1o1, d1gd1p1, d1gd1q1, d1gd1r1
  4. Domain d1gd1r2: 1gd1 R:149-312 [39880]
    Other proteins in same PDB: d1gd1o1, d1gd1p1, d1gd1q1, d1gd1r1
    complexed with nad, so4
3. Domains for 2dbv:
  1. Domain d2dbvo2: 2dbv O:149-312 [39885]
    Other proteins in same PDB: d2dbvo1, d2dbvp1, d2dbvq1, d2dbvr1
  2. Domain d2dbvp2: 2dbv P:149-312 [39886]
    Other proteins in same PDB: d2dbvo1, d2dbvp1, d2dbvq1, d2dbvr1
  3. Domain d2dbvq2: 2dbv Q:149-312 [39887]
    Other proteins in same PDB: d2dbvo1, d2dbvp1, d2dbvq1, d2dbvr1
  4. Domain d2dbvr2: 2dbv R:149-312 [39888]
    Other proteins in same PDB: d2dbvo1, d2dbvp1, d2dbvq1, d2dbvr1
    complexed with ndp, so4; mutant
4. Domains for 2gd1:
  1. Domain d2gd1o2: 2gd1 O:149-312 [39893]
    Other proteins in same PDB: d2gd1o1, d2gd1p1, d2gd1q1, d2gd1r1
  2. Domain d2gd1p2: 2gd1 P:149-312 [39894]
    Other proteins in same PDB: d2gd1o1, d2gd1p1, d2gd1q1, d2gd1r1
  3. Domain d2gd1q2: 2gd1 Q:149-312 [39895]
    Other proteins in same PDB: d2gd1o1, d2gd1p1, d2gd1q1, d2gd1r1
  4. Domain d2gd1r2: 2gd1 R:149-312 [39896]
    Other proteins in same PDB: d2gd1o1, d2gd1p1, d2gd1q1, d2gd1r1
    complexed with so4
5. Domains for 3dbv:
  1. Domain d3dbvo2: 3dbv O:149-312 [39897]
    Other proteins in same PDB: d3dbvo1, d3dbvp1, d3dbvq1, d3dbvr1
  2. Domain d3dbvp2: 3dbv P:149-312 [39898]
    Other proteins in same PDB: d3dbvo1, d3dbvp1, d3dbvq1, d3dbvr1
  3. Domain d3dbvq2: 3dbv Q:149-312 [39899]
    Other proteins in same PDB: d3dbvo1, d3dbvp1, d3dbvq1, d3dbvr1
  4. Domain d3dbvr2: 3dbv R:149-312 [39900]
    Other proteins in same PDB: d3dbvo1, d3dbvp1, d3dbvq1, d3dbvr1
    complexed with nad, so4; mutant
6. Domains for 4dbv:
  1. Domain d4dbvo2: 4dbv O:149-312 [39889]
    Other proteins in same PDB: d4dbvo1, d4dbvp1, d4dbvq1, d4dbvr1
  2. Domain d4dbvp2: 4dbv P:149-312 [39890]
    Other proteins in same PDB: d4dbvo1, d4dbvp1, d4dbvq1, d4dbvr1
  3. Domain d4dbvq2: 4dbv Q:149-312 [39891]
    Other proteins in same PDB: d4dbvo1, d4dbvp1, d4dbvq1, d4dbvr1
  4. Domain d4dbvr2: 4dbv R:149-312 [39892]
    Other proteins in same PDB: d4dbvo1, d4dbvp1, d4dbvq1, d4dbvr1
    complexed with ndp, so4; mutant
Escherichia coli [TaxId:562] [55350] (6 PDB entries)
1. Domains for 1dc3:
  1. Domain d1dc3a2: 1dc3 A:149-312 [39873]
    Other proteins in same PDB: d1dc3a1, d1dc3b1
  2. Domain d1dc3b2: 1dc3 B:149-312 [39874]
    Other proteins in same PDB: d1dc3a1, d1dc3b1
2. Domains for 1dc4:
  1. Domain d1dc4a2: 1dc4 A:149-312 [39875]
    Other proteins in same PDB: d1dc4a1, d1dc4b1
  2. Domain d1dc4b2: 1dc4 B:149-312 [39876]
    Other proteins in same PDB: d1dc4a1, d1dc4b1
    complexed with g3h
3. Domains for 1dc5:
  1. Domain d1dc5a2: 1dc5 A:149-312 [39867]
    Other proteins in same PDB: d1dc5a1, d1dc5b1
  2. Domain d1dc5b2: 1dc5 B:149-312 [39868]
    Other proteins in same PDB: d1dc5a1, d1dc5b1
4. Domains for 1dc6:
  1. Domain d1dc6a2: 1dc6 A:149-312 [39871]
    Other proteins in same PDB: d1dc6a1, d1dc6b1
  2. Domain d1dc6b2: 1dc6 B:149-312 [39872]
    Other proteins in same PDB: d1dc6a1, d1dc6b1
    complexed with nad
5. Domains for 1gad:
  1. Domain d1gado2: 1gad O:149-312 [39865]
    Other proteins in same PDB: d1gado1, d1gadp1
  2. Domain d1gadp2: 1gad P:149-312 [39866]
    Other proteins in same PDB: d1gado1, d1gadp1
    complexed with nad
6. Domains for 1gae:
  1. Domain d1gaeo2: 1gae O:149-312 [39869]
    Other proteins in same PDB: d1gaeo1, d1gaep1
  2. Domain d1gaep2: 1gae P:149-312 [39870]
    Other proteins in same PDB: d1gaeo1, d1gaep1
    complexed with nad; mutant
Human (Homo sapiens) [TaxId:9606] [55360] (1 PDB entry)
- Domains for 3gpd:
  1. Domain d3gpdg2: 3gpd G:151-314 [39944]
    Other proteins in same PDB: d3gpdg1, d3gpdr1
    complexed with ips, nad, sps
  2. Domain d3gpdr2: 3gpd R:151-314 [39943]
    Other proteins in same PDB: d3gpdg1, d3gpdr1
Leishmania mexicana [TaxId:5665] [55357] (5 PDB entries)
1. Domains for 1a7k:
  1. Domain d1a7ka2: 1a7k A:166-334 [39923]
    Other proteins in same PDB: d1a7ka1, d1a7kb1, d1a7kc1, d1a7kd1
  2. Domain d1a7kb2: 1a7k B:166-334 [39924]
    Other proteins in same PDB: d1a7ka1, d1a7kb1, d1a7kc1, d1a7kd1
  3. Domain d1a7kc2: 1a7k C:166-334 [39925]
    Other proteins in same PDB: d1a7ka1, d1a7kb1, d1a7kc1, d1a7kd1
  4. Domain d1a7kd2: 1a7k D:166-334 [39926]
    Other proteins in same PDB: d1a7ka1, d1a7kb1, d1a7kc1, d1a7kd1
    complexed with nad, po4
2. Domains for 1gyp:
  1. Domain d1gypa2: 1gyp A:166-334 [39919]
    Other proteins in same PDB: d1gypa1, d1gypb1, d1gypc1, d1gypd1
  2. Domain d1gypb2: 1gyp B:166-334 [39920]
    Other proteins in same PDB: d1gypa1, d1gypb1, d1gypc1, d1gypd1
  3. Domain d1gypc2: 1gyp C:166-334 [39921]
    Other proteins in same PDB: d1gypa1, d1gypb1, d1gypc1, d1gypd1
  4. Domain d1gypd2: 1gyp D:166-334 [39922]
    Other proteins in same PDB: d1gypa1, d1gypb1, d1gypc1, d1gypd1
    complexed with nad, po4
3. Domains for 1gyq:
  1. Domain d1gyqa2: 1gyq A:166-334 [39927]
    Other proteins in same PDB: d1gyqa1, d1gyqb1, d1gyqc1, d1gyqd1
  2. Domain d1gyqb2: 1gyq B:166-334 [39928]
    Other proteins in same PDB: d1gyqa1, d1gyqb1, d1gyqc1, d1gyqd1
  3. Domain d1gyqc2: 1gyq C:166-334 [39929]
    Other proteins in same PDB: d1gyqa1, d1gyqb1, d1gyqc1, d1gyqd1
  4. Domain d1gyqd2: 1gyq D:166-334 [39930]
    Other proteins in same PDB: d1gyqa1, d1gyqb1, d1gyqc1, d1gyqd1
    complexed with nbd
4. Domains for 1i32:
  1. Domain d1i32a2: 1i32 A:166-334 [65994]
    Other proteins in same PDB: d1i32a1, d1i32b1, d1i32c1, d1i32d1, d1i32e1, d1i32f1
  2. Domain d1i32b2: 1i32 B:166-334 [65996]
    Other proteins in same PDB: d1i32a1, d1i32b1, d1i32c1, d1i32d1, d1i32e1, d1i32f1
  3. Domain d1i32c2: 1i32 C:166-334 [65998]
    Other proteins in same PDB: d1i32a1, d1i32b1, d1i32c1, d1i32d1, d1i32e1, d1i32f1
  4. Domain d1i32d2: 1i32 D:166-334 [66000]
    Other proteins in same PDB: d1i32a1, d1i32b1, d1i32c1, d1i32d1, d1i32e1, d1i32f1
  5. Domain d1i32e2: 1i32 E:166-334 [66002]
    Other proteins in same PDB: d1i32a1, d1i32b1, d1i32c1, d1i32d1, d1i32e1, d1i32f1
  6. Domain d1i32f2: 1i32 F:166-334 [66004]
    Other proteins in same PDB: d1i32a1, d1i32b1, d1i32c1, d1i32d1, d1i32e1, d1i32f1
    complexed with nmd
5. Domains for 1i33:
  1. Domain d1i33a2: 1i33 A:166-334 [66006]
    Other proteins in same PDB: d1i33a1, d1i33b1, d1i33c1, d1i33d1, d1i33e1, d1i33f1
  2. Domain d1i33b2: 1i33 B:166-334 [66008]
    Other proteins in same PDB: d1i33a1, d1i33b1, d1i33c1, d1i33d1, d1i33e1, d1i33f1
  3. Domain d1i33c2: 1i33 C:166-334 [66010]
    Other proteins in same PDB: d1i33a1, d1i33b1, d1i33c1, d1i33d1, d1i33e1, d1i33f1
  4. Domain d1i33d2: 1i33 D:166-334 [66012]
    Other proteins in same PDB: d1i33a1, d1i33b1, d1i33c1, d1i33d1, d1i33e1, d1i33f1
  5. Domain d1i33e2: 1i33 E:166-334 [66014]
    Other proteins in same PDB: d1i33a1, d1i33b1, d1i33c1, d1i33d1, d1i33e1, d1i33f1
  6. Domain d1i33f2: 1i33 F:166-334 [66016]
    Other proteins in same PDB: d1i33a1, d1i33b1, d1i33c1, d1i33d1, d1i33e1, d1i33f1
    complexed with tnd
Lobster (Homarus americanus) [55358] (2 PDB entries)
1. Domains for 1gpd:
  1. Domain d1gpdg2: 1gpd G:149-312 [39935]
    Other proteins in same PDB: d1gpdg1, d1gpdr1
  2. Domain d1gpdr2: 1gpd R:149-312 [39936]
    Other proteins in same PDB: d1gpdg1, d1gpdr1
    complexed with ips, nad, sps
2. Domains for 4gpd:
  1. Domain d4gpd12: 4gpd 1:148-311 [39931]
    Other proteins in same PDB: d4gpd11, d4gpd21, d4gpd31, d4gpd41
  2. Domain d4gpd22: 4gpd 2:148-311 [39932]
    Other proteins in same PDB: d4gpd11, d4gpd21, d4gpd31, d4gpd41
  3. Domain d4gpd32: 4gpd 3:148-311 [39933]
    Other proteins in same PDB: d4gpd11, d4gpd21, d4gpd31, d4gpd41
  4. Domain d4gpd42: 4gpd 4:148-311 [39934]
    Other proteins in same PDB: d4gpd11, d4gpd21, d4gpd31, d4gpd41
Lobster (Palinurus versicolor) [55359] (5 PDB entries)
1. Domains for 1crw:
  1. Domain d1crwg2: 1crw G:149-312 [39941]
    Other proteins in same PDB: d1crwg1, d1crwr1
  2. Domain d1crwr2: 1crw R:149-312 [39942]
    Other proteins in same PDB: d1crwg1, d1crwr1
2. Domains for 1dss:
  1. Domain d1dssg2: 1dss G:149-312 [39937]
    Other proteins in same PDB: d1dssg1, d1dssr1
  2. Domain d1dssr2: 1dss R:149-312 [39938]
    Other proteins in same PDB: d1dssg1, d1dssr1
    complexed with nad, so4
3. Domains for 1ihx:
  1. Domain d1ihxa2: 1ihx A:149-312 [71212]
    Other proteins in same PDB: d1ihxa1, d1ihxb1, d1ihxc1, d1ihxd1
  2. Domain d1ihxb2: 1ihx B:149-312 [71214]
    Other proteins in same PDB: d1ihxa1, d1ihxb1, d1ihxc1, d1ihxd1
  3. Domain d1ihxc2: 1ihx C:149-312 [71216]
    Other proteins in same PDB: d1ihxa1, d1ihxb1, d1ihxc1, d1ihxd1
  4. Domain d1ihxd2: 1ihx D:149-312 [71218]
    Other proteins in same PDB: d1ihxa1, d1ihxb1, d1ihxc1, d1ihxd1
    complexed with snd, so4
4. Domains for 1ihy:
  1. Domain d1ihya2: 1ihy A:149-312 [71220]
    Other proteins in same PDB: d1ihya1, d1ihyb1, d1ihyc1, d1ihyd1
  2. Domain d1ihyb2: 1ihy B:149-312 [71222]
    Other proteins in same PDB: d1ihya1, d1ihyb1, d1ihyc1, d1ihyd1
  3. Domain d1ihyc2: 1ihy C:149-312 [71224]
    Other proteins in same PDB: d1ihya1, d1ihyb1, d1ihyc1, d1ihyd1
  4. Domain d1ihyd2: 1ihy D:149-312 [71226]
    Other proteins in same PDB: d1ihya1, d1ihyb1, d1ihyc1, d1ihyd1
    complexed with apr, so4
5. Domains for 1szj:
  1. Domain d1szjg2: 1szj G:149-312 [39939]
    Other proteins in same PDB: d1szjg1, d1szjr1
  2. Domain d1szjr2: 1szj R:149-312 [39940]
    Other proteins in same PDB: d1szjg1, d1szjr1
    complexed with nad, so4
Spinach (Spinacia oleracea) [TaxId:3562] [69769] (1 PDB entry)
- Domains for 1jn0:
  1. Domain d1jn0a2: 1jn0 A:149-312 [66916]
    Other proteins in same PDB: d1jn0a1, d1jn0b1, d1jn0o1
  2. Domain d1jn0b2: 1jn0 B:149-312 [66918]
    Other proteins in same PDB: d1jn0a1, d1jn0b1, d1jn0o1
    complexed with ndp, so4
  3. Domain d1jn0o2: 1jn0 O:149-312 [66920]
    Other proteins in same PDB: d1jn0a1, d1jn0b1, d1jn0o1
Thermotoga maritima [TaxId:243274] [55353] (1 PDB entry)
- Domains for 1hdg:
  1. Domain d1hdgo2: 1hdg O:149-312 [39905]
    Other proteins in same PDB: d1hdgo1, d1hdgq1
  2. Domain d1hdgq2: 1hdg Q:149-312 [39906]
    Other proteins in same PDB: d1hdgo1, d1hdgq1
    complexed with nad, so4
Thermus aquaticus [TaxId:271] [55352] (1 PDB entry)
- Domains for 1cer:
  1. Domain d1cero2: 1cer O:149-312 [39901]
    Other proteins in same PDB: d1cero1, d1cerp1, d1cerq1, d1cerr1
  2. Domain d1cerp2: 1cer P:149-312 [39903]
    Other proteins in same PDB: d1cero1, d1cerp1, d1cerq1, d1cerr1
  3. Domain d1cerq2: 1cer Q:149-312 [39902]
    Other proteins in same PDB: d1cero1, d1cerp1, d1cerq1, d1cerr1
  4. Domain d1cerr2: 1cer R:149-312 [39904]
    Other proteins in same PDB: d1cero1, d1cerp1, d1cerq1, d1cerr1
    complexed with nad
Trypanosoma brucei brucei, glycosome [TaxId:5702] [55356] (1 PDB entry)
- Domains for 1gga:
  1. Domain d1ggaa2: 1gga A:165-333 [39917]
    Other proteins in same PDB: d1ggaa1, d1ggab1, d1ggao1, d1ggap1, d1ggaq1, d1ggar1
  2. Domain d1ggab2: 1gga B:165-333 [39918]
    Other proteins in same PDB: d1ggaa1, d1ggab1, d1ggao1, d1ggap1, d1ggaq1, d1ggar1
    complexed with nad, so4
  3. Domain d1ggao2: 1gga O:165-333 [39913]
    Other proteins in same PDB: d1ggaa1, d1ggab1, d1ggao1, d1ggap1, d1ggaq1, d1ggar1
  4. Domain d1ggap2: 1gga P:165-333 [39914]
    Other proteins in same PDB: d1ggaa1, d1ggab1, d1ggao1, d1ggap1, d1ggaq1, d1ggar1
  5. Domain d1ggaq2: 1gga Q:165-333 [39915]
    Other proteins in same PDB: d1ggaa1, d1ggab1, d1ggao1, d1ggap1, d1ggaq1, d1ggar1
  6. Domain d1ggar2: 1gga R:165-333 [39916]
    Other proteins in same PDB: d1ggaa1, d1ggab1, d1ggao1, d1ggap1, d1ggaq1, d1ggar1
Trypanosoma cruzi [TaxId:5693] [75483] (1 PDB entry)
- Domains for 1k3t:
  1. Domain d1k3ta2: 1k3t A:165-333 [72023]
    Other proteins in same PDB: d1k3ta1, d1k3tb1, d1k3tc1, d1k3td1
  2. Domain d1k3tb2: 1k3t B:165-333 [72025]
    Other proteins in same PDB: d1k3ta1, d1k3tb1, d1k3tc1, d1k3td1
  3. Domain d1k3tc2: 1k3t C:165-333 [72027]
    Other proteins in same PDB: d1k3ta1, d1k3tb1, d1k3tc1, d1k3td1
  4. Domain d1k3td2: 1k3t D:165-333 [72029]
    Other proteins in same PDB: d1k3ta1, d1k3tb1, d1k3tc1, d1k3td1
    complexed with brz

More info for Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from d.81.1.1: GAPDH-like

Timeline for Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from d.81.1.1: GAPDH-like:

Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from d.81.1.1: GAPDH-like first appeared (with stable ids) in SCOP 1.55
Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from d.81.1.1: GAPDH-like appears in SCOP 1.61
Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from d.81.1.1: GAPDH-like appears in SCOP 1.65
Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from d.81.1.1: GAPDH-like appears in the current release, SCOPe 2.08