SCOPe 2.05: Family d.79.1.1: YjgF/L-PSP

Lineage for Family d.79.1.1: YjgF/L-PSP

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
   core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest

4. Superfamily d.79.1: YjgF-like [55298] (3 families)
   forms trimers with three closely packed beta-sheets; possibly related to the IspF (d.79.5) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)

5. Family d.79.1.1: YjgF/L-PSP [55299] (12 proteins)
   some members possess an endoribonuclease activity inhibiting mRNA translation

Proteins:

1. 14.5 kda translational inhibitor protein, L-PSP [89979] (3 species)
   mammalian tumor associated antigen UK114

   1. Species Goat (Capra hircus) [TaxId:9925] [103077] (1 PDB entry)

   2. Species Human (Homo sapiens) [TaxId:9606] [89980] (1 PDB entry)

   3. Species Norway rat (Rattus norvegicus) [TaxId:10116] [103078] (1 PDB entry)
      Perchloric acid soluble protein

2. Conserved 'hypothetical' protein YjgF [55300] (2 species)

   1. Species Escherichia coli [TaxId:562] [55301] (1 PDB entry)

   2. Species Haemophilus influenzae [TaxId:727] [82719] (1 PDB entry)
      YjgF homologue HI0719

3. Highdosage growth inhibitor YER057cp (YEO7_YEAST) [64319] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64320] (1 PDB entry)

4. Hypothetical protein SO1960 [160498] (1 species)

   • Species Shewanella oneidensis [TaxId:70863] [160499] (1 PDB entry)
     Uniprot Q8EFL1 2-153

5. Hypothetical protein SPy2060 [143527] (1 species)

   • Species Streptococcus pyogenes [TaxId:1314] [143528] (1 PDB entry)
     Uniprot Q99XS4 3-122

6. Hypothetical protein ST0811 [143521] (1 species)

   • Species Sulfolobus tokodaii [TaxId:111955] [143522] (1 PDB entry)
     Uniprot Q973T6 1-124

7. Hypothetical protein YjgH [103075] (1 species)

   • Species Escherichia coli [TaxId:562] [103076] (1 PDB entry)

8. Purine regulatory protein YabJ [55302] (2 species)

   1. Species Bacillus subtilis [TaxId:1423] [55303] (1 PDB entry)

   2. Species Clostridium thermocellum [TaxId:1515] [118024] (1 PDB entry)
      Uniprot Q4CI45

9. Putative endonuclease APE1501 [143523] (1 species)

   • Species Aeropyrum pernix [TaxId:56636] [143524] (1 PDB entry)
     Uniprot Q9YBU8 4-119

10. Putative protein synthesis inhibitor TM0215 [143525] (1 species)

    • Species Thermotoga maritima [TaxId:2336] [143526] (1 PDB entry)
      Uniprot Q9WY58 2-127

11. Putative translation intiation inhibitor TTHA0137 [143529] (1 species)

    • Species Thermus thermophilus [TaxId:274] [143530] (1 PDB entry)
      Uniprot Q5SM06 1-124

12. automated matches [190254] (4 species)
    not a true protein

    1. Species Escherichia coli [TaxId:562] [188034] (4 PDB entries)

    2. Species Pyrococcus horikoshii [TaxId:53953] [187648] (1 PDB entry)

    3. Species Thermus thermophilus HB8 [TaxId:300852] [187037] (1 PDB entry)

    4. Species Thermus thermophilus [TaxId:274] [187040] (2 PDB entries)

More info for Family d.79.1.1: YjgF/L-PSP

Timeline for Family d.79.1.1: YjgF/L-PSP:

• Family d.79.1.1: YjgF/L-PSP first appeared (with stable ids) in SCOP 1.55, called Family d.79.1.1: YjgF
  
• Family d.79.1.1: YjgF/L-PSP appears in SCOPe 2.04
  
• Family d.79.1.1: YjgF/L-PSP appears in SCOPe 2.06
  
• Family d.79.1.1: YjgF/L-PSP appears in the current release, SCOPe 2.08